Conserved Protein Domain Family
tSAM_targ_Cxxx

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TIGR04114: tSAM_targ_Cxxx 
modification target Cys-rich repeat
This model describes a cysteine-rich repeat found in a number of bacterial putative radical-SAM modified natural product precursors. A substantial fraction of members of this family have been missed during gene-finding. A true hit to the model must exceed both TC on the whole and trusted cutoff 2 for at least one domain, to avoid false-positives from African swine fever virus proteins.
Statistics
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PSSM-Id: 274990
Aligned: 32 rows
Threshold Bit Score: 26.3128
Created: 9-Oct-2014
Updated: 23-Jan-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_04856155    7 WCEGGCYSSCTWTCEGCS 24  Ruminococcus sp. 5_1_39BFAA
ZP_04856155   49 GCDNKCTASCAQSCTGCS 66  Ruminococcus sp. 5_1_39BFAA
ZP_04856155   70 GCGNSCGSGCTDSCMGTC 87  Ruminococcus sp. 5_1_39BFAA
ZP_04856157  129 GCTGGCDTTCAKSCSDGC 146 Ruminococcus sp. 5_1_39BFAA
ZP_02995802   28 DCTGRCADGCTGPCKANC 45  Clostridium sporogenes ATCC 15579
WP_011418766  56 NCNSMCASSCSLSCSGRC 73  Syntrophus aciditrophicus
WP_012102227  45 GCTGTCTTGCS-SCSGNC 61  Clostridium kluyveri
WP_012102227  22 GCYGSCKTGCTDACTSCV 39  Clostridium kluyveri
WP_013546279 144 GCSVSCRITCDRTCQGQC 161 Bacteroides helcogenes
WP_013546279 124 GCGNSCNRGCAQNCDATC 141 Bacteroides helcogenes
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