Conserved Protein Domain Family
cas8c_GSU0052
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TIGR04106: cas8c_GSU0052 
CRISPR-associated protein GSU0052/csb3, Dpsyc system
This model describes a CRISPR-associated (cas) protein unique to the Dpsyc subtype (named for Desulfotalea psychrophila), a variant type I-C subtype, although not universal to the that subtype. Members of this family occur in CRISPR loci of Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, Rhodospirillum centenum SW, Planctomyces limnophilus DSM 3776, and Methylosinus trichosporium OB3b.
Links
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Statistics
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PSSM-Id: 274984
Aligned: 5 rows
Threshold Bit Score: 336.837
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
ZP_02732422    2 SFSVAVDPTNPGQFFACCGLLELADRLWPGAEG---WFEDGT---FHVST-------GDIATLIDQLVCLRFVSSLGd-D 67  Gemmata obscuri...
ZP_06886667    4 PAEIPVDLFNPGQVFACLGFLEAAETLLGEAEGgfvWRDGPAr--FLLRAkg---aeNAFAEVVGFLSRAQAHALAP--E 76  Methylosinus tr...
WP_010940730   8 AISIRVDPTNPGQFFACCGLLELADRLWDGAEG---WFDKDGf-lFSLRPyqekaqkCAPATLLAEITRCRLTNTMSd-S 82  Geobacter sulfu...
WP_013111394   7 GIRVDVDVTNPGQFFACCGLLELADRLWPGAEG---WFEPGSr-tFNINCv------gTLQTLVISLHEAKLVSTMTa-P 75  Planctomyces li...
WP_012567107   3 TSSIPVDLRNPGQVFACLGLMEAAEILGDPAEGgffWKDREThvrFTLTTpg---eaDPVLTVLRFLTQAEVVALAPyhS 79  Rhodospirillum ...

ZP_02732422   68 GLKRLGSLLSADKs---TLTELDKQDKER--LRKAWQVERVQipAPFDFWLDWwwn--------dkSGVTLLKTWAAKQ- 133 Gemmata obscuri...
ZP_06886667   77 GSRNSTEKWDVETlrlrRGEAFPFSDPNSpaTLPALLGDGERg-IIIDYWGDA-------------TRRDNVKFWAGAGg 142 Methylosinus tr...
WP_010940730  83 ELKRRDQLMAVPKk---IIESDPSLEAEKkvLDKLWREAPLVlhSPFNIRVDWfld--------eyCGGTMFKTWAGQQ- 150 Geobacter sulfu...
WP_013111394  76 QRRRLEELSSLKAk---ELKEQPSLENEKkeLEKLRRESPLVllAPFSIRLDWfed--------efSGGGRFKTWAGQQ- 143 Planctomyces li...
WP_012567107  80 GIRDSHKIRTVETk----NREFPCPLPAEtaLPIFLQADGVR--VPISHWVDSfgkyniekrlfisSGVDNVKFWAGNN- 152 Rhodospirillum ...

ZP_02732422  134 -FVLSMANPMLSALKSlTWDSS--SRENCLQRTAKLSGLPFYFDAANntqnTPRDNGFAPGAV-KS------APNDRPLL 203 Gemmata obscuri...
ZP_06886667  143 yPGAALARDALGLVQS-GMTID--LADPFAAAAPQSSSFRLDWRRDY----IPLDAGFSPNDH-TDv-----KMVGYPLV 209 Methylosinus tr...
WP_010940730 151 -SVFEIGRGMKAALDSgDWSHT--SPDDWLRRRMLNDSLPFNFDSELggvgSDLDVGFSFDPL-KTi-----KVQARPLL 221 Geobacter sulfu...
WP_013111394 144 -SVESISTSMKHALSTfTWWPH--PPKTLLDEISHENGLGFNFDSHVssqgSALDVGFSLDSL-STnsttriTVGARPYQ 219 Planctomyces li...
WP_012567107 153 -SGAKIANLGLSIIKSvSDDIHsiSAHPFAFAHPQSSSFRFDWRRDY----IPLDVGFSPNDHdKKv-----RMVGYPLV 222 Rhodospirillum ...

ZP_02732422  204 ELLAFVGLQRFRPHRPDKAErILYATWSIPLPP-----SVASVAAAGMLNVTGSRAFEFRMLY-----RTEYMkAFLPAQ 273 Gemmata obscuri...
ZP_06886667  210 ELLAAIGLTHARPQRIDKLT-YRYGVMTLDDPPhrvdaMLLRAALGGAELPFRRRSFLMRLGWpgqenQARCI-THVEET 287 Methylosinus tr...
WP_010940730 222 EFLAFVGLQRFRPMKINAENrFQYFLWFGPLVS-----EVAAPAACGLFGPVRLKAFEFRLLY-----RTKYLkSFLPAT 291 Geobacter sulfu...
WP_013111394 220 EFLTFVGLQRFRPLEVSNENrFLYQAWTTPLNP-----LLAAGVTSCTIDAIAHLTFEFRLLY-----RTKYLkSFLNAT 289 Planctomyces li...
WP_012567107 223 ELLAAIGLQHARPLRLQNLA-YRYGAWGARVPT-----LFARAMLGLSNPGFPIRSFTMHLGWpgkegQARCIkDALEDT 296 Rhodospirillum ...

ZP_02732422  274 A 274 Gemmata obscuriglobus UQM 2246
ZP_06886667  288 P 288 Methylosinus trichosporium OB3b
WP_010940730 292 P 292 Geobacter sulfurreducens
WP_013111394 290 P 290 Planctomyces limnophilus
WP_012567107 297 A 297 Rhodospirillum centenum
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