Conserved Protein Domain Family
dnd_restrict_1

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TIGR04095: dnd_restrict_1 
DNA phosphorothioation system restriction enzyme
The DNA phosphorothioate modification system dnd (DNA instability during electrophoresis) recently has been shown to provide a modification essential to a restriction system. This protein family was detected by Partial Phylogenetic Profiling as linked to dnd, and its members usually are clustered with the dndABCDE genes.
Statistics
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PSSM-Id: 274978
Aligned: 10 rows
Threshold Bit Score: 722.208
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_06848636  248 YRRPPT-LK----LRDYQKDAIRAWWKENGRGIWEMATGTGKTVTALAAVEA----LwgvqQ-NK-DSLLVVVTVPYKHL 316 Mycobacterium p...
ZP_03273890    7 PVIPPQ-IH----LRHYQRQAVSEWFANQGRGTLKMATGTGKTITALAIASE----L----Y-HKiGLQVVLVICPYRHL 72  Arthrospira max...
ZP_06303869   46 PKIPLH-VE----LRGYQKQAITSWFANNGRGTLKMATGSGKTITALAIAYE----L----Y-KQiGLQVLLVVCPHRHL 111 Raphidiopsis br...
WP_012595330  44 PHLPTT-LN----LRDYQQEAIINWFKNKGRGTLKMATGSGKTITALALTTE----L----Y-QKiGLQALLVICPYRHL 109 Cyanothece sp. ...
WP_015881060   8 PSLPKW-FT----PRDYQLEAIQKWSENDYRGLLEMATGTGKTLTALTAITK----R----Y-EEtNRLAIIILCPYQHL 73  Exiguobacterium...
WP_011939346 248 FIPPKS-FE----LRPYQADAIRAWSKAGGKGIFAMATGSGKTLTALTLASK----V----A-EKnRPLVLIVVCPFINL 313 Geobacter urani...
WP_011567105 239 PRVPEH-FLtngrLRGYQEEGIRKWFKNNGRGVLHMATGTGKTVTALTAVTR----LndfvA-QKnGQLCIVVTVPYQHL 312 Roseobacter den...
WP_015949508 243 TLIPRNdIE----LYPHQLKSISAWAEAGGKGIFKLGTGTGKTMTALFLASK----L----YdNTsKGFVLIIAAPFIHL 310 Desulfatibacill...
WP_012083044 240 PSIPPD-FE----IRTYQKEAIKAWLKNNGRGILSMATGSGKTKTALYTIVK----L----L-EEiKSLPVLIVVPYKHL 305 Nitratiruptor s...
WP_010984360 255 lTIPPL-LE----VRDYQKRAVTQWFAQRGRGILRMATGTGKTLTALSAAAQvtkmL----H-KVgEPLLTVVIAPYQHL 324 Streptomyces av...
ZP_06848636  317 AEQWAAEARKFGANPILAYDDASRWIPQMEAAVAALSPTNRKLILVIAVNRTFCGSK----FIDRLR----AASCTKMLI 388 Mycobacterium p...
ZP_03273890   73 VTQWGREAQKFGMTPLLAFESVHNWQKHLSTSLYNISSGHLPFLAVITTNATLISDS----FQSQLR----YFPPKTLII 144 Arthrospira max...
ZP_06303869  112 VTQWGRECEKFNLKPILAYENIRNWHSQMSVELYNLGSGYQKFLTIITTNLTLIGEG----FQSQLK----YFPPKTLII 183 Raphidiopsis br...
WP_012595330 110 VTQWSRECEKFNLDPILAFDSVYQWQNLLSNQLYNIHSGQQSFLTIITTNATLINQG----FQSQLK----FFPEKTLIV 181 Cyanothece sp. ...
WP_015881060  74 VDQWAKDAESFGMNPVLCYGSKSQWTSILSGKITQYNFKIQNFMCVITTNSTFKNAN----FQAQLN----RITDGGMIV 145 Exiguobacterium...
WP_011939346 314 CRQWLREMAAFGLQPVACFEGKDRWQAELEEGYQRLSVGLSQVHAIVATNATFQSES----FQARIRprvaTLAVHHLLI 389 Geobacter urani...
WP_011567105 313 AEQWAGEAEEFGFEPILCYGGVNRWMEECQRRLNELRSKATQHVMLIAVNASMADKP----FQSVLG----SFDGNILFV 384 Roseobacter den...
WP_015949508 311 VDQWIIEAKKFGLNPIRCAEGSSNWESELSSGISSVNSGRRSILSIVCTISTLTGNNgnrkFLNFIR----LIKKPILFI 386 Desulfatibacill...
WP_012083044 306 LEQWYIEAKEFNIELIRCNSDYPNWQKELSTKITN-NLLNKKPVFAITTNNTYKSKK----FQSLIN----RLN-NLFLI 375 Nitratiruptor s...
WP_010984360 325 VDQWAKDIEWFGVHPLRAYESTAAWFPHASQLLDALALHTTRGGVIITTNKTFGETA----FQSILQ----RYRGQLLLI 396 Streptomyces av...
ZP_06848636  389 CDEAHTAGSKEMRAALPDDITFRLGLSATPERHLDPEGTQAIRYYFGKSVY-QLGLKQAIQLGALVPYRYHPIIVELTPE 467 Mycobacterium p...
ZP_03273890  145 GDEAHNLGAPRLEASLPRHIGLRLALSATPERHFDDQGTNALMEYFGRVLQpELTLAEAIRQGALVHYLYYPILVELTPA 224 Arthrospira max...
ZP_06303869  184 GDEAHNLGAPRLEESLPRSVGLRLALSATPERYFDEEGTESLLEYFGPVLQpEFSLKDAIDQGALVHYLYYPVFVELTEL 263 Raphidiopsis br...
WP_012595330 182 GDEAHHLGSPRFAESLPRNIGLRLALSATPERYFDEPGTDALLGYFGQVIQpEFTLKEAIKKKALVNYLYYPIFVELTES 261 Cyanothece sp. ...
WP_015881060 146 ADEAHNLGTKQSLQSLPTAFKNRLALSATPIRHHDGSGTEQLLNYFGGSIY-KFTLEEAIKKGFLTKYYYYPHLVSLTED 224 Exiguobacterium...
WP_011939346 390 ADEVHNLGAERIREALPDGIALRLGLSATPERHYDPVGTSAVLDYFGNIVY-EYPLSSAIADGRLCRYRYYPIPVELTET 468 Geobacter urani...
WP_011567105 385 GDEAHNLGAPSNLQALPERAAFRLGLTATPDRYGDEEGTDALKRYFGEIVL-DYGLDKAISGGHLCRYLYYPILVHLDED 463 Roseobacter den...
WP_015949508 387 GDEVHNFGSTKLSDILPSYIPYRLGLSATPTRWLDDEGTNNILKYWGDIVC-SYDLSEALKDNVLTPYYYHPVITHFDID 465 Desulfatibacill...
WP_012083044 376 VDEVHNFGSKEIKENYLDNAKFRLGLSATPQRHFDEEGTKALLNYFGKIVY-EFTLKEAIDNGYLTEYYYHPIFVYLTEE 454 Nitratiruptor s...
WP_010984360 397 ADEAHNLGARHIRSKLPDSAQFRLGLSATPERWFDDEGTAALTDYFGPVVF-ELGLGDAIKAGALCRYTYKPVIVELNAD 475 Streptomyces av...
ZP_06848636  468 EHDKYVELTEKISQLLGIASd---vDPDGAPTAVEMLLFQRARLIGSASGKVPALVDAITPHVQES--Y-ILVYCADr-- 539 Mycobacterium p...
ZP_03273890  225 ETLIYSRLTTRIGWALMDND-----QDWETNENITALLMQRARIIGAANNKVKALRQLMSNRLQTS--H-TLFYCGDgit 296 Arthrospira max...
ZP_06303869  264 ESINYLRLTKKIGRCLQNREik-etVSFEDMEGIKSLLIKRARLISSAENKLVALRHLMLNRLNTS--H-TLFYCSDgsq 339 Raphidiopsis br...
WP_012595330 262 EALEYAKLTQRIGWALNNSE------TWKQNPTITALLMQRSRLIGSAANKLEALRELMKTRLNTH--H-TLFYCGDgsi 332 Cyanothece sp. ...
WP_015881060 225 ELEIYHELTNKISKLVNLSDqqsieSTGSTTGLLEMLLIKRARLINSAQQKDILLKKQLSMQETLD--H-TIVYCGDh-- 299 Exiguobacterium...
WP_011939346 469 ETDAYEEITTKLAKFFSKGD-----DDSEMQQVAMRLLIKRARLLAGAENKLAALDRVIASLPEPP--KkAIFYCGDgrt 541 Geobacter urani...
WP_011567105 464 EQDEYAELSVRIGRLFGQAAk----LESDKGEQLNRLLIKRARLIGKARNKLPELIKLLKQQGEVS--H-TLIYCGDs-- 534 Roseobacter den...
WP_015949508 466 EYYEYVKLTKELKKYTWNEE------SLEASGPAKILLIKRARLVASAKSKLSLLKDMLLKRTIDN--H-ILVYCGDgkv 536 Desulfatibacill...
WP_012083044 455 EEKEYIALSEKISQFRPINEd----NEENIPGFLKMLLIKRAKIIESAQNKIHKLKEILTKNNLINskK-NLFYVSSei- 528 Nitratiruptor s...
WP_010984360 476 ETDLYIEITEKIGKLFAMQQf---sEQADDNSPLGHLLRKRANLLGHARAKLPALRREISQRREEW--Y-QLLYCAEgqh 549 Streptomyces av...
ZP_06848636  540 --------CGDDPQLDQVVRALG--RDLRMRINTFTAEEDSSTRAKLLTRFSSGELQALAAIRCLDEGVDIPATRRAYIL 609 Mycobacterium p...
ZP_03273890  297 -----ekgTRFDRQLEAIVFLLG--SELGYRVNTYTAATPMAKREELRRQFESGQLQGLVAIRCLDEGVDIPAIRHAVIL 369 Arthrospira max...
ZP_06303869  340 e----ggnHS--YQLEEVTKILG--VELGYKISTYTARTSLPEREVLRKQFESGDLQGLVAIRCLDEGVDIPAIRTAVIL 411 Raphidiopsis br...
WP_012595330 333 e----nesLNYRKQVEAVTRILG--IELGYRVNTYTAETPLEQREKIRQQFEWGELQGLVAIRCLDEGVDIPAIQQAVIL 406 Cyanothece sp. ...
WP_015881060 300 -------sIEDQRHVDHITQFLN--EDLNISAKTFTSTESKELRQILLKEFSENAIQALVAIRCLDEGVDVPSAETAYIL 370 Exiguobacterium...
WP_011939346 542 t---daitDEEVRQIQAVSRLLG--ERHGLRVRNFTFRESTEEREEILRDLTSGFLDGVVAIRCLDEGIDLPDLRMGFLL 616 Geobacter urani...
WP_011567105 535 -------kEDGHRYIDTALARVG--GELGLRASPFTSEENNDERSRLLKQFAAGDIQALLAIRCLDEGVDVPMTRTAYIL 605 Roseobacter den...
WP_015949508 537 e---gpdpDSFTRQVSEAVRIIG--NDIGMTCASYTAATPAKKRKDLLRNFDNGLLQVLVAIRCLDEGVDVPSTKTAFIL 611 Desulfatibacill...
WP_012083044 529 -------eYKNDKKIRNIDKYTNllRSLGMNVEPFTALEDKWQRNNLIMKLENDLIDGLVAIKCLDEGVDIPSVRRAFIL 601 Nitratiruptor s...
WP_010984360 550 plsyedgaAAEPAQIDQVLDLVG--NHLHMPAARYTAETKRPERRQVLQRFTDRKLQVIASMRCLDEGVDVPAARTAYLL 627 Streptomyces av...
ZP_06848636  610 ASSQNPRQFIQRRGRVLRPAPGKTTADIYDLMVSPPdlsddpRLFE----LERRLVGRELMRATELCDAAVNSIDALSTL 685 Mycobacterium p...
ZP_03273890  370 ASSSNPRQFIQRRGRVLRPHPGKDRATVFDMIVLPP------DLGRntldVERNLLKKELIRFMEFADIADNAGEARVKL 443 Arthrospira max...
ZP_06303869  412 SSSSNPRQFIQRRGRVLRPHPGKERATIFDMIVSPP------DLDReameVERNLLRKELKRFVEFSNLADNAGEARMKL 485 Raphidiopsis br...
WP_012595330 407 ASTGNPHQFIQRRGRILRPHPGKKQATLFDMIVMPP------ELDRntweVERNLLRKELKRFVEFAQLADNAEEAQGKL 480 Cyanothece sp. ...
WP_015881060 371 ASTTNPKEFIQRRGRILRKHPGKEYAYIHDYIVIPRplteidLLTDkefnIERRLLMNELKRVNEFASISENHYQALQVL 450 Exiguobacterium...
WP_011939346 617 ASSTNPRQFVQRRGRLLRNSPGKNRAIIYDFIVQPPdl--ggSLDDdgfnMERSFFQRELSRIVEFCRMAENGPEALHSL 694 Geobacter urani...
WP_011567105 606 ASSANPKEFVQRRGRVLRRSKGKNRAYIYDFIVVPDleqlsdQAPSn---VERSLMKRELSRFNEFATLAENHGEALSTI 682 Roseobacter den...
WP_015949508 612 ASSTNPRQFIQRRGRVLRKYPGKNFAEIYDFVVVPPke--adYEEDidflAAKSLISGQVNRAREFAELAENGPVARSGL 689 Desulfatibacill...
WP_012083044 602 SSSSNPKEFIQRRGRILRKSPGKKYAHIYDFLVIPRga---dIENf---eYERKYLERELRRFQEFAKLAKNSLEAESQI 675 Nitratiruptor s...
WP_010984360 628 ASSSNPRQFIQRRGRVLRQAPGKTMADIVDFIVVPPtn--mpDLQDr---tERSMVARELARVTEFAQLADNEAETldll 702 Streptomyces av...
ZP_06848636  686 RPLRARYDL 694 Mycobacterium parascrofulaceum ATCC BAA-614
ZP_03273890  444 LQLQKRYGL 452 Arthrospira maxima CS-328
ZP_06303869  486 FNLQKRYSL 494 Raphidiopsis brookii D9
WP_012595330 481 LKIHDHYRL 489 Cyanothece sp. PCC 8801
WP_015881060 451 NPIKEAFNL 459 Exiguobacterium sp. AT1b
WP_011939346 695 HDLRLKYNL 703 Geobacter uraniireducens
WP_011567105 683 TEIKKCLNL 691 Roseobacter denitrificans
WP_015949508 690 LQITKEFEL 698 Desulfatibacillum alkenivorans
WP_012083044 676 FEIKKQYNL 684 Nitratiruptor sp. SB155-2
WP_010984360 703 rplrlrygl 711 Streptomyces avermitilis
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