Conserved Protein Domain Family
exp_by_SipW_IV

?
TIGR04090: exp_by_SipW_IV 
alternate signal-mediated exported protein, CPF_0494 family
Members of this largely Clostridial protein family contain the cognate signal peptide domain, modeled by TIGR04088, for the variant SipW form of the signal peptidase I family. The remainder of this protein, however, differs from families such as Peptidase_M73 (pfam12389) and YqxM (TIGR04087) that share the same signal peptide domain. Some additional homologs to this family lack full-length homology and are excluded by the trusted cutoff as set. The two known targets for export by the SipW signal peptidase in Bacillus subtilis act in producing biofilm matrix material. Members include CPF_0494, adjacent to SipW homolog CPF_0493.
Statistics
?
PSSM-Id: 274973
Aligned: 7 rows
Threshold Bit Score: 247.93
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
ZP_02433141   7 NKKYLFTFAFLCIFLIGGVFAYWTQELQVRNEFKTAKYDTTIVEEFTA--PSEWLPGQEVNKDVSVRNKGTIPVFVRVSI 84  Clostridium scin...
ZP_04566369   7 KKSLSALISLAAIVLVVGTLAYFSRDLTVENRLKTAKYDTTIEEEFIP--TDKWAPGVEINKKVTVKNTGNVDIVVRAKL 84  Coprobacillus sp...
ZP_02429168   4 KKSLGGILLLALTVGVVGSLAYFSQELTKTNEFKTAKYDTTIEEEFTP--PTDWLPGVEVNKDVTVKNSGNVDVVVKATL 81  Clostridium ramo...
ZP_06345813   3 KKAALGLAGIAAVAVIGGTWAYWSQDLTATNEFETGKFDSDIVEQFTPpaVGEWLPGVTTEKNVKVTNSGDVDMALVAEI 82  Clostridium sp. ...
ZP_02433139   3 NKKLKAIAGLVAVAVIGGSLAYFNQTMTVENPFDTNKYSSELVETFNPgdGDDWQPGATVNKDIQVDNTGDYDVIVRVKF 82  Clostridium scin...
ZP_02429170   4 KKSLIAIISLSAFLVIGGAVAYYNSTTNVDNKLKTGQFKSEVVEKFTP--KDNWEPGDKVTKEVGVENTGTGNIVSRAMW 81  Clostridium ramo...
ZP_02429171   4 KKSVVASIVLSGALVVVGTLAYFTQTHTVDNKLKTKGFGSDIVEKFTP---KEFNPGATVTKEVRVDNTGDYALVARAKW 80  Clostridium ramo...
ZP_02433141  85 HQKWVRRedv-ydGEGKPISPLKGETIPLTFETGNGSAYA-SQVTWGNDVVVLSSGKQgdidlgi---psvdtiRDAKGK 159 Clostridium scin...
ZP_04566369  85 TELWKRSenlmdpNDPDKILSEEGEILPNSFVDENGISHDaAIKNFVQNMVYEYEDVKdn-------------lADYHNK 151 Coprobacillus sp...
ZP_02429168  82 TESWTR-------GD---------ETLSNTFTDENGLTQNaALLALPNVVKYTDDIEL----------------AAQAGK 129 Clostridium ramo...
ZP_06345813  83 TQEWNRE------GESLPIRFAAPDPSPITRGYENAAVINwGENTAMHDITAIDSVAEearemgitasvsslgdSEAKDK 156 Clostridium sp. ...
ZP_02433139  83 DETWTRK------GGNSAYVKNTGINDSTSQTDETDGLVT-GDYSVVKKNLL------------------------NADK 131 Clostridium scin...
ZP_02429170  82 SETWKT---------------AVGEDITVTSADPRASVVE----------------------------------KEYGNK 112 Clostridium ramo...
ZP_02429171  81 EESWTR-------NGEEFKAVAYPDTNNESVVDKNGMS----------------------------------------DK 113 Clostridium ramo...
ZP_02433141 160 WlLLTDkvdeegnlHFYYIGNIQPNTDAPR-LVDAVTMHPAIE----------------------PEIKGEKVWYDGS-- 214 Clostridium scin...
ZP_04566369 152 WiHYGD--------YYYYLGVIGEDEASNG-LLNSVKMNPLLD----------------------ATVSGSHTVVEADeq 200 Coprobacillus sp...
ZP_02429168 130 WvEYe--------gTYYYMGAIKGGNSSAL-LLDNVTLNPLLD----------------------VTDKSVTTVVTTDen 178 Clostridium ramo...
ZP_06345813 157 W-VLVDvsddysklIFVYNGIVPAGEETPE-LLNSVTLNSKIEswvsekn--------yfydengEQQVEEKGWMEVN-- 224 Clostridium sp. ...
ZP_02433139 132 W-FYNTkd-----gYYYYLDNLKAGQNTGT-FLDSVKLIDNADmgkyevikyyt-sadnkpaddvIGDDASTGW-KVYtg 202 Clostridium scin...
ZP_02429170 113 W-IYSNsd-----gYFYYDGIISSGGRAEDkFLKSIMLSGDVDfaetkktvvyy-stmttgepskITNNPETGWAVAPnt 185 Clostridium ramo...
ZP_02429171 114 W-VDGNd------gWAYYNEMIGVNGHTEN-FLTSITLKNSADvvgtdiknfyyttaatepdktsIGTDSKTQWVKISee 185 Clostridium ramo...
ZP_02433141 215 ------------DNKVTQEI---KNTTYGYENARYTMTVSADTVQATSGAVKAVFGN 256 Clostridium scindens ATCC 35704
ZP_04566369 201 -----------gTTTVTKKY---QYGKYGYDSADYTLTVEARTVQASKAAIRNAFGD 243 Coprobacillus sp. D7
ZP_02429168 179 ----------gtKKEITTTE----KGKYGYDDANYKLTVTANTIQATASAIKTW-GS 220 Clostridium ramosum DSM 1402
ZP_06345813 225 -----------------------------YEDAQYTMDIHVNTVQATGDAIREIFSQ 252 Clostridium sp. M62/1
ZP_02433139 203 e--------vpaDAKHTRTVtklVNGCEGYADSDYKLTITAQTVQASKEAVNGVFGL 251 Clostridium scindens ATCC 35704
ZP_02429170 186 g--------ipnNATYNKTV---VTGNGKYASANYTLTITVQVYQANKQAVAGTAFE 231 Clostridium ramosum DSM 1402
ZP_02429171 186 efkalddennniKATFKRAE---VKSNGLYDNAEYTLTITAQVSQANKEAAATWITD 239 Clostridium ramosum DSM 1402
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap