Conserved Protein Domain Family
photo_TT_lyase

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TIGR04070: photo_TT_lyase 
spore photoproduct lyase
DNA damage to bacterial spores from ultraviolet light accumulates in the form of 5-thyminyl-5,6-dihydrothymine, spore photoproduct. The damage is repaired by spore photoproduct lyase, a member of the radical SAM family of enzymes. The score of this model is set to restrict itself to spore-forming members of the Firmicutes, but additional homologs scoring below the trusted cutoff tend to occur in radioresistant organisms (e.g. Kineococcus radiotolerans) and may be functionally equivalent. A related family in the Mycobacterium lineage is described by family TIGR03886, and may or may not be equivalent in function. [DNA metabolism, DNA replication, recombination, and repair, Cellular processes, Sporulation and germination]
Statistics
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PSSM-Id: 213890
Aligned: 16 rows
Threshold Bit Score: 554.601
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012425159   2 FIPKRILFEKGSLDYEIGQSIYNTFKDnKNVDIINISGNRVKQHIPGDDTYSYYREGKNTLVVGIKKSFKFQSCKPSAHY 81  Clostridium bot...
WP_011877066  15 FIPKRVFMEPAALEYELGQRLREQFRA-EGIPVTVTGSHNRVTGIPGTTPQEAFLESKRTLVVGVRRGKDFQTCKPSAHY 93  Desulfotomaculu...
WP_012283373  32 YVPQRVFFEGEALAYPLGQKIVALCRE-LGLPTRQIPSHNRVTGLPGDTPNQKYAEAKKTLVVGVKRDLRFPTCRPSADY 110 Heliobacterium ...
WP_012620926   8 FVPKRVVFEEKALEYNLGNNILDYFKH-KNNVEILYSKSGRIVGIPGKNPEEMYLQGKNTLVVGIRKSSSFQSCRPSAHY 86  Clostridium klu...
WP_009879610  21 FMPKLVYFEPKALEYPLGKELYEKFTK-MGLEIRETTFHNQIRNLPGENDLQKYRNAKATLVVGVRKTLKFDTSKPSAEY 99  Bacillus anthracis
WP_013913641   3 nMFRRVIFEKKALDYPMGRDILRQFEN-TDIEIR-YSETGRITGIPGKDEAQSFFEGKNTLVVGVRRELDFQTCKPSANY 80  Clostridium ace...
WP_011948023   2 FIPKTVIFEEKALEYVRGKEILKELKN-K-NIEIKYSKTGRVTGQRDKTPNEMYSEGKDTLVIGIRKSLDFQSCKPSAHY 79  Clostridium bot...
WP_012033417   3 FEPKRVIFEQDALKYPLGEKLLRYFKD-KGVDTGFTASHNRVVSIPGKSRAEGFFEGKRTLVVGVRRTMSFETCKPSAHY 81  Pelotomaculum t...
WP_012301789   4 FAPARVIFEREALEYPLGRSLYERFSA-EGFKVEFTGSHNRVGTIPGKTPREAYAEAKKTLVFGVRRTLDFQTCKPSAHY 82  Candidatus Desu...
WP_011393427   3 VELKRVVFEPEALNYPLGRKLYQRFHE-ERVEVLMTPSHNRVTCIPGKTARESFLEAKRTLVVGVRRSRDFQTCKPSAHY 81  Moorella thermo...
WP_012425159  82 QLPLLSGCTGYCEYCYLNTNLSTKPFVKVNVNIDDILNQAKKHIIERSPEITMFEGAATSDPIPVEPYTHSLQKAIEFFA 161 Clostridium bot...
WP_011877066  94 QLPLVTSCPGKCEYCYLLTNLGKKPYIRLYVNIEEILDRAKEYIIEYLPRETIFEGAATSDPIPVEHYTGALKQAIEFFG 173 Desulfotomaculu...
WP_012283373 111 QFPLMTSCPGHCEYCYLQTTLGQRPYLRVYVNVEEMLDQAAKYIEKNTPKTTTFEVASSGDPLSVEHLTGSLFKTIEFFG 190 Heliobacterium ...
WP_012620926  87 QLPLCSGCMGMCEYCYLNTQMGKRPYMKVYVNLDEILNKAEKYEIERYPNSTIFEGAATSDPIPVEFYTGALKKAIEFFG 166 Clostridium klu...
WP_009879610 100 AIPLATGCMGHCHYCYLQTTLGSKPYVRVYVNLDEIFEKAQQYMDERAPEITRFEAACTSDIVGIDHLTHALKRAIEFIG 179 Bacillus anthracis
WP_013913641  81 QLPIVSGCAAMCEYCYLNTHGGKKPYVKINVNLDDILSKAGEYIEKRKPDITVFEGAATSDPVPVERYSGALKKAIEYFG 160 Clostridium ace...
WP_011948023  80 QLPLVSGCMGMCEYCYLNTQMGKRPYTKVYVNTEEILNKAEKYSRERLPEITVFEGAATSDPIPVEPYTHSLKDTIEFFG 159 Clostridium bot...
WP_012033417  82 QLPLATSCPGKCEYCYLLTNLGKKPYVRIYVNTEEILSAAREYIEKRKPEITVFEGAATSDPVPVEPYTGVLGKVIEFFG 161 Pelotomaculum t...
WP_012301789  83 QLPLTTSCPGKCEYCYLMTSLPARPYVRAYVNIEEILSRTRQYIDQRKPQITLFEGSATSDPVPVERYTRALADTIRFFG 162 Candidatus Desu...
WP_011393427  82 QLPLVTSCPAMCEYCYLFTHFGRKPYQKIYVNIAEILALARDYINRRDPEVTYFEASATSDPVPVEKYTGSLAAAIEFMA 161 Moorella thermo...
WP_012425159 162 NEEKGKFRFVTKYNDVDTLLNIDHKGKTEIRFTLNTNKVINDFENRTSSYDLRLEACEKVAKAQYPIGFIIAPVFLYENW 241 Clostridium bot...
WP_011877066 174 GQEHARFRFVTKFSDVDSLLDAKHNGRTRFRFSLNTDYVIRQFEHGTPPMHERVAAAGKVAQAGYPLGFLVAPIVLYDGW 253 Desulfotomaculu...
WP_012283373 191 AQEHGRLRFVTKFTGVGPLLKARHNGHTRFRFSLNSARVVRDFEHRTPPVAERIAAATQVARAGYPLGFIIAPIMVYPGW 270 Heliobacterium ...
WP_012620926 167 SRDNSYFRFVTKFTDINSLLNLEHNGKTTIRFSINTDKIITQFEHRTPKVEERLRAAFKVIKAGYKLGFIIAPVFLYSNW 246 Clostridium klu...
WP_009879610 180 ESEHGRLRFVTKYSHVDHLLDAKHNGKTRFRFSINSRYVIKNFEPGTSPFEERIEAARKVAGAGYPLGFIVAPLYMHEGW 259 Bacillus anthracis
WP_013913641 161 KNEYSRFRFVTKYADISELLAVQHNNHTTIRFSINTPRVIKNYEHRTSSLEDRIESAYNILNSGYKTGFIVGPVFLYENW 240 Clostridium ace...
WP_011948023 160 QKHNMKFRFVTKFTDVNSLVHLNHNRNTTIRFSINTDNIIRNFEHRTPLVIDRLKAAEKIAKAGYSLGFIIAPVFIYRGW 239 Clostridium bot...
WP_012033417 162 KQEYGRFRFVTKFTDVDSLLGVPHNGHTRFRFSINTGEVIKQFEHATPPLMERLAAAKKVAGAGYQLGFLVAPIIASEGW 241 Pelotomaculum t...
WP_012301789 163 GQEYGRFRFVTKFTDLDTLLDVEHNGRTTIRFSVNIPEIIRAHEHGTPSLAKRLEAAGKVARAGYPVGFMVAPIIL-DGD 241 Candidatus Desu...
WP_011393427 162 RQPLGRLRVATKFTDVDGLLNLDHRGHTRFRFSINAENIIKRFEHGTPPLGQRLAAAAQMAGGGYLTGFIIAPIFYLEGW 241 Moorella thermo...
WP_012425159 242 KED---YNELLIRLHDKM--PKDLKYPLSFEVITHRYTTRAKNVINEVFPDNTLPMNDEERKYKYGQFGYGKYVYTKEQL 316 Clostridium bot...
WP_011877066 254 QQG---YQELFEELYRVL--DLVSQQDLTFEFITHRFTQRAKTNILDIFPNCRLDMDEEKRQFKFGQFGYGKYVYPKDSM 328 Desulfotomaculu...
WP_012283373 271 EED---YLQLFDHLKRELasIQPLSPPVTFELIQHRFTARAKKVILERFPESRLDMDEEERKFKYGKYGMGKYVYPDETA 347 Heliobacterium ...
WP_012620926 247 KEE---YKVLLEKINNIF--QG---EEISFEVISHRFTKRAKENILKVYSSTSLPMEEEGRKFKYGQFGYGKYIYKREEL 318 Clostridium klu...
WP_009879610 260 EEG---YRELFERLYNAL--NDLSIPNLTFELIQHRFTKPAKKVIQERYPNTKLEMDEEKRKYKWGRYGIGKYVYKKDDA 334 Bacillus anthracis
WP_013913641 241 KKE---YEELLKKASDKL-----GDKELEFEIISHRFTTSAKNKILKVFPNTKLPMDDEARKFKFGQFGYGKYVYDKDDM 312 Clostridium ace...
WP_011948023 240 EKE---YLDLLKNINIMF--KGV---PVEFEVISHRFTKRAKDNILSVFSNTTLPMVEENRKFKYGQFGYGKYIYKDEEL 311 Clostridium bot...
WP_012033417 242 RKN---YRDLFETAALEF---KGKAPDLTFEFITHRFTRRAKSAILEVFPNTRLDLEEEARTFKFGQFGYGKYVYPKELF 315 Pelotomaculum t...
WP_012301789 242 PRGiavYQELLEEIRSRI--N--GLDNLSFEFITHRFTARAEKRIREIFPRTRLPMLGENRRFKFGQFGYGKYVYTPELM 317 Candidatus Desu...
WP_011393427 242 QQQ---YRHLFQVIARQP--LLAESNDLTLELITHRFTKRAKTSIETLFPNTKLPLDEEERTFRYGQFGYGKYVYPAEVR 316 Moorella thermo...
WP_012425159 317 EEVKSFFTIKINELFKNSVIKYII 340 Clostridium botulinum
WP_011877066 329 AEVKEFMQGMVDRYFPAAKVEYLV 352 Desulfotomaculum reducens
WP_012283373 348 KSMKNLLRTALLERFPDAEIEYFT 371 Heliobacterium modesticaldum
WP_012620926 319 EDMKEFFEKNIGINFGAGAINYII 342 Clostridium kluyveri
WP_009879610 335 EVLEETIRGYIYEFFPDAEIQYFT 358 Bacillus anthracis
WP_013913641 313 QEIKEFFINNINLYFNKATIKYII 336 Clostridium acetobutylicum
WP_011948023 312 QNIKKFFRDSITKFFGEDNINYII 335 Clostridium botulinum
WP_012033417 316 AVLKSYFETRAGEFFPEAKVEYFV 339 Pelotomaculum thermopropionicum
WP_012301789 318 EAAKKALISKTKALFPESKIEYFV 341 Candidatus Desulforudis audaxviator
WP_011393427 317 TALEAFFKEMVATYLPRAKVEYFI 340 Moorella thermoacetica
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