Conserved Protein Domain Family
rSAM_ocin_clost

?
TIGR04068: rSAM_ocin_clost 
Cys-rich peptide radical SAM maturase CcpM
Members of this family are radical SAM enzymes that occur next to clostridial Cys-rich predicted bacteriocin (or other class of ribosomal natural product) precursors (see families TIGR04065 and TIGR04067). They include a TIGR04085 C-terminal additional 4Fe4S cluster-binding domain that is associated with peptide modification by radical SAM enzymes, and they are proposed to be ribosomal natural product maturases. The gene symbol ccpM is assigned, for Clostridial Cys-rich Peptide Maturase. [Cellular processes, Toxin production and resistance]
Statistics
?
PSSM-Id: 274958
Aligned: 12 rows
Threshold Bit Score: 658.991
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
ZP_05494390    3 VYKLLKTPLQYYVYDRNKNKILNISKEEYEELDRLNkkq--------iteKEAVCLKKYQKCGYLKNNIVENIVHPETKY 74  Clostridium pap...
ZP_03291143    6 YYKTFKTPQAYYVYDRRSNKILKITQEAYEELNEKG--------------LEKQRWKVFRDKGYLLEDVLEEIEHPDTSL 71  Clostridium nex...
ZP_05493896    4 FIHLFKTPGGHYFYDVNKNVILSLSEEQYKILEYYRksdetdkctsefnaQAIESIKHLRDLGFLSEKRPKEMYHPLNDT 83  Clostridium pap...
ZP_04745996    3 VFHTFTAGGKRYMFDANTNVIINLKEDLYFELEKYMqsg---------ykEITPAIEKLRDRGYLKDRADFEMVHPMDST 73  Roseburia intes...
EDT81752       7 FIHLFKTRGGNYAYDVNTNSFLKINKNTYELLCKNMnsd--------skeKQFEVIEDIKKEGFLSSNTIEEMVHPMSEV 78  Clostridium bot...
ZP_05494856    8 FVHFFKTHKANYIYDFNTNAILKVNSDVYDDIQQFVetgel----nstcpDSKEVISSIQRQGYLNSFRWKEILHPASKL 83  Clostridium pap...
EDT83823       6 FIHLFETPLEKYFYDVNMNEIVNIPETVYKYLNNGDmsde-------disIVEKYVKNLKDNGYLKKKRVETVKNPLTKC 78  Clostridium bot...
ZP_01962654    5 LIKCIQTPMQKYFYDRSLDSVVMVNDEEYQILKTVEktkl----------vpdGVLRRFVKSGLLRETAIEEIEHPETEN 74  Ruminococcus ob...
WP_003405998   6 FFHLFKTRNCCYIYDVNTNLFLKVPKETYSALENYNgdl--------ealKDDSVILNLKEKGYLSSNRAEEIEHSLTDA 77  Clostridium bot...
WP_015925794   8 FIHMFETNGSKYFYDVNKNSIIGISEELADALNKNDm--------------EHPKVQSLIEKGFLSDKHVETIIHPEDKF 73  Clostridium cel...
WP_012200690   4 LFHAFSIAKHWYVFDANKNSIISVNEDQHNALSEIEqgi--------etrENLSILHEFQEKGFCREAIIESIYNPNTDL 75  Clostridium phy...
WP_011860654   6 FIHTFKAGKSYFIYDVNTDKILKVNAAVYNYLNKIEhnleke---sdwniEIEDEINTLINYGFLKNKRVSKTMHPETKY 82  [Clostridium] d...
ZP_05494390   75 IKHYLEHRVQFLILQVTQSCNLRCDYCTYSGQYNTRGHSGKSMTWELAKKSIDYLYQHSNEIEKVRISFYGGEPLLEIDL 154 Clostridium pap...
ZP_03291143   72 LEYSLQTKVQYMILQVTQECNLRCKYCVYGGGYDNRTHAHKFMDWNLAKESLDYFIAHSGQVQELSVGFYGGEPMLQMEL 151 Clostridium nex...
ZP_05493896   84 ILSHLNNKVSKITLQITKQCNLRCKYCIYSGDYENRVHSNEKMTLDTARKGIDFYIEHSKDNEKALLAFYGGEPLLEFEF 163 Clostridium pap...
ZP_04745996   74 LEYSLERCIGTIALQVTQGCNLRCKYCAYSGSYDNRVHSSKRMSKEIAFKAIDFLFDHSIDRDRVSLGFYGGEPLLELDL 153 Roseburia intes...
EDT81752      79 LPNYLDSSLFMLTLQVTQQCNFRCKYCTYSGLDENRTHSNKDMSLDIAKKAIDFYIKHSRDSKYLNIGFYGGEPLLRFDF 158 Clostridium bot...
ZP_05494856   84 LPYYLDNCMQMLTLQVTQACNLRCAYCTYSGNFVNRHHSNVRMSYDTAKKAVDFYIKHSTNTDKLNFGFYGGEPLLEFEL 163 Clostridium pap...
EDT83823      79 AKCYIDNKINYLVLQVTQNCNLRCEYCVYSGGYDTRVHNKSRMDIGIAKKGIDFLIKHSSDCEELKLGFYGGEPLLEFEL 158 Clostridium bot...
ZP_01962654   75 LHLLAEHYMGNLILQVTQQCNLRCKYCAYSGNYYNRSHTSNRMDFETAKKAIDFYLKRSEKADQLALSFYGGEPLLEFEL 154 Ruminococcus ob...
WP_003405998  78 LESILDNSLNTLTLQITQECNLRCSYCVYSGSYLNRSHSHKIMSIDTAKKGIDFIINHSKNSPTVNFAFYGGEPLLRFNF 157 Clostridium bot...
WP_015925794  74 LEYHLNNKINMITIQVTQACNLRCTYCPYSGKYNNRQHSNRKMSLEMAIRGIDFLWEHSIDCDYVNIGFYGGEPIIEFDL 153 Clostridium cel...
WP_012200690  76 IGAHLEKKIQNVIIQVTQGCNLRCAYCAYSGRYQNRTHSPKRMSFETAKRAIDMALSHSEDTQFIIFSFYGGEPLLELPL 155 Clostridium phy...
WP_011860654  83 IKYHIENNLSSIILQVTQNCNLRCDYCIYSGSYSNRVHTNKRMNIDVAKRSIDYLIKNSSQLNEVSVGFYGGEPLLEFDL 162 [Clostridium] d...
ZP_05494390  155 IKKCVEYVKETYPHRITNYGITTNGTLLSGEIADFLIDNQFSVTISLDGSKKDHDANRKFAN-GEGSFDTIINNIKVISK 233 Clostridium pap...
ZP_03291143  152 IQKCVDYMEKSVPDRKVNFMMTTNGTLLTVEKAKYFYEKGFNIVISLDGSREDHDKNRVFRDsGKGSFEVIMKNLQMIKK 231 Clostridium nex...
ZP_05493896  164 IKNCVEYFEEKAEGKNIYFSLTTNATLLNEEIVEYFQKHSVHLLISLDGSSEIHNRNRVYRD-DKGTFEKVLENLEMIKT 242 Clostridium pap...
ZP_04745996  154 IKECVKYAKKKSIGKELMFNITSNTTLITDEVLKFLYDNEFSLTVSLDGDRQAHDKNRVFAAnGAGTFSVVMQILEKIQT 233 Roseburia intes...
EDT81752     159 VRECVNYAKEKGEGKTVEFNMTTNGTLFNEERLKFLSENNFRIMISLDGPKEIHDKNRTFLNg-EGTFDKIMKNIEMIKS 237 Clostridium bot...
ZP_05494856  164 IKNVIEYIEKNSEGKEKGYNLTTNATLLNEEIVSFLQEYDVRLTISIDGPKEIHDKNRIKKDc-SGSFDTIIENIKMISE 242 Clostridium pap...
EDT83823     159 IKQCVKYAATVAEGKKIGYYITTNGTLINDEVIDFFYNNNFTVTISLDGPSHIHNRSRHFAYsDKGSFDKIMENLSNIKK 238 Clostridium bot...
ZP_01962654  155 IKKCVSYILQRKGDKKILFTMTTNGTLMTEDVIEFLVKYEFNLMISLDGDKKSHDINRRFKTg-KGSFDIILENLSRLKA 233 Ruminococcus ob...
WP_003405998 158 IKECVAYAKEKGEGKKITFNMTINGTLLTDEIIKFMKDNEVSLLISMDGPKEIHDKNRVFSN-GMGSFDKIMNNINKIKV 236 Clostridium bot...
WP_015925794 154 IKESIEYAKTKFEGKHVNFSITTNGTIITREIIEYFYQNDVVLMISLDGPKDIHDKNRVYAD-NSGSFDTVISNITKIKE 232 Clostridium cel...
WP_012200690 156 IKRCVKYIKQQAPNRDIIFSMTTNGTLLTPDVYGYLSDNGFNIVISLDGPKQIHDMSRKYPD-GRGSYDIIMENIKAIKS 234 Clostridium phy...
WP_011860654 163 IKQIVEYVKVVGEGKEIYFNLTTNATLFNEEIIEFFVKNNITTMISLDGGKEIHDKSRKFANtGEGSHDVVLKNVRYIKN 242 [Clostridium] d...
ZP_05494390  234 HNKEFIKN-IRFNTVLNPKSDYGTVRNYFSSEDVVCDAGIGLSLME--QINHKGDISFSHEFINIRRYDYFLLLMTMVKK 310 Clostridium pap...
ZP_03291143  232 ECPEFLEK-VTFNTVLNYNCDFSCVRDYFSTDDLMHDATYVLNLVE--ETGAKEEILYSDEFQIEYKYSHFLMFMYMLGK 308 Clostridium nex...
ZP_05493896  243 KFPDFLSKnIAFNAVLDPQNEFSCVNNFFTDFELAKEASVMASQIS--NLYRKDTVKASKEYISEIEYEIFKIFLSELGY 320 Clostridium pap...
ZP_04745996  234 QYPDYMER-VHINAVIDPTTDFDCTSNFFSDYKTVKDFYIQANLIS--EYYRKDEVATDEEYREKFSYEIFKMYLQKLGR 310 Roseburia intes...
EDT81752     238 KYPKFLDEnIDFNAVIDGKSDVACTDKFFINYNTVKDLKVRTSFVSd-TYKKIEQFTVEEENMIKIGYERFKLLLWKLGK 316 Clostridium bot...
ZP_05494856  243 KFPSYGDK-VMFNCVLDPRNDFGCINEFFTNYEGINGFYSSFAHIAk-EYIINDVYDTAEEYSKQYDYEVFKLFMSKIGR 320 Clostridium pap...
EDT83823     239 KYPDYYQGnIQFNTVLTTENGFSEIEEFFKNNSLLKNNTMTSSLVS--DVYAKGERKVGENYVREERYLEFLMLLCKIGW 316 Clostridium bot...
ZP_01962654  234 YNEEYYSK-VLFNCVISSSSDLENIYRFYSEEELFEAGTVNFNYVNpvGLKDETLSRITQKNFRVHRLAYIKMILSVLEK 312 Ruminococcus ob...
WP_003405998 237 KFPEYVEKnVGFNIVMDGQNDFSCINNFFANYDTVKDSRVNATDVS--TLGALEEKAISEEFIQDEKYERFKILLHKLGK 314 Clostridium bot...
WP_015925794 233 NYPDYFSK-VIFNVVADPENDYNCTSQFLSGNEVIQDAIINASEIN--MFYRKENVEISEDYFIKRGYEFFKLFLSQINR 309 Clostridium cel...
WP_012200690 235 QYPESRDK-LRFNAVLSPEIDDSCLPTLFKSDDVLSYYNHTANSVS--DAYTEEHTSYSDAFSLCYDRELCKLLLFKLGK 311 Clostridium phy...
WP_011860654 243 KYPEYYKKnITFNTVINSENDYISIDDFISKNETLKDSNFLASTLN--NNYSDKEIVSSDEYILGKSYDRFLTLLNKLKF 320 [Clostridium] d...
ZP_05494390  311 LKKEVTP-KFMAEIKSgIDIDYTS-MEDINSVSKSWHHSGPCIAGAMRMFVNTDGVIYPCEKAIETSEaMKIGEIDSGTD 388 Clostridium pap...
ZP_03291143  309 CDRKYILnSQMSEIEY-YRHTYQI-MKDSDSLKKIGHHNGPCIPGGRRLFVSVTGDFYPCEKVTEELG-MRIGNIKEGIN 385 Clostridium nex...
ZP_05493896  321 LDEKYTSkLLSKEYVErKVRYSRL-QMR-DELPDRIHHGGPCVAGVQRLFVDVDGNFYPCERVSESSPqMKIGNINDGFD 398 Clostridium pap...
ZP_04745996  311 LENGSVSkLVSHGFHSlKEIHDKT-KMPSSLTIKRDHHSGPCVPGIQRLFVDVEGNLYPCERVSEASKaVRMGHIDTGFD 389 Roseburia intes...
EDT81752     317 LDEKHVSkLFQGNFNNvKNLLHDK-KSTYKKLNKKGHHGGPCIPGVTRLFVSVDGKFFPCEKVNEKSKvMQIGNISDGFD 395 Clostridium bot...
ZP_05494856  321 LDKKHVSkIVEAYYLNiKNAMIDN-RPVTAGMAKIGHHGGPCIAGMHKLFVNAQGDFYPCEKVSECSEaMKIGSIDSGFN 399 Clostridium pap...
EDT83823     317 LKDYRISqLMKGTFDDlLHFEEEMsKQKRKELPDEWHHGGPCMPGVKRLFMTVDGQFYPCEKVSETREeNKIGDVLDGIN 396 Clostridium bot...
ZP_01962654  313 RKWDAQSrLLRRELQDiELLYEQL--HSHVAEGKKTHHGGPCIPAVRRLFVDTKGEFFPCERVSEEDSeMCIGSLDSGFD 390 Ruminococcus ob...
WP_003405998 315 LDEKYISkLLLSQFEHiNHTLNVK-REANEKVPKKMHPGGPCIPGLNRLFMTVDGKFCPCERVNEESEaMNIGNVNTGFE 393 Clostridium bot...
WP_015925794 310 FDSEKVSpLVTSRFNMlEKMFNEQ-MEITESLPDKYHHGGPCIPGSQRLFMSVDGTFYPCERVSEESEvVKIGHIDRGID 388 Clostridium cel...
WP_012200690 312 LEKEHVSvLFGIREADiRREYGRL-KK-IPRISPICHPGGPCLAGAMRLFVNVDGKLFPCERVSENSQlMAIGDLDNGFD 389 Clostridium phy...
WP_011860654 321 IKDESMSpLSRIERALlDDFRYEKnIEGRLELPDVWHHGGPCIPGAFRIFVTTDGEFFPCERVSESSKmGMIGNLDSGVD 400 [Clostridium] d...
ZP_05494390  389 AGKASKVMNIGKISERDCKNCWAINWCSMCALYA-EKDGKFDSVTKRKNCAKSLIDAQEKLLNICALKEFGYK 460 Clostridium papyrosolv...
ZP_03291143  386 LDVCKKMLNIGKVTKEQCKECWALRLCGQCIAKC-TENGEISCQKKLCQCVQSKQMAMNDLLVICMLKEFGYD 457 Clostridium nexile DSM...
ZP_05493896  399 VNKIKTLLNIGKLSENKCVDCWALMFCDLCAAAA-DDIDGLSTEKKVSKCSGVIDTADSMFKDICTLREFGAE 470 Clostridium papyrosolv...
ZP_04745996  390 IDKARALLNIGKLTEKECKQCWAFRFCSACAVQA-DNLEELSAEKKLQNCALIRGHIDNMMRDYCVMRDLGCN 461 Roseburia intestinalis...
EDT81752     396 IEKIRNLMNVGKLTENKCKKCWAFRYCFLCSAFA-DDNTKLSKEKKTSRCTHVRASIDNMFKTYCTLKEFGYD 467 Clostridium botulinum ...
ZP_05494856  400 QDKIYQLINIGQLTENQCKGCWAAKFCYLCALFA-DDSGNLSIDRKMFYCKQVRENVEQQLKEYCLLKEMNFD 471 Clostridium papyrosolv...
EDT83823     397 MEQVHKILNIESMNHNICRNCWAYSFCGNCILNI-DNIDKENNSNNNTMCSVFRRDTEEKMKTWCILKRLNYD 468 Clostridium botulinum Bf
ZP_01962654  391 FDKMSFLLNHGKMIKEKCLGYWNLRMCAYCLAQIpKDNQILTENMLLQQCENSKESTLLLLYKLCILVEFGYK 463 Ruminococcus obeum ATC...
WP_003405998 394 IEKIKKLINVGEMTKQKCKNCWAFRYCYLCAAFA-DDMNELSGVKRAKFCNDVKRNTEEMFKVYCTMMEFGYK 465 Clostridium botulinum
WP_015925794 389 IDKVRILLNIGKLTEEKCKNCWAIRYCSLCMVSC-DNLKELSGKQKLSYCNSVKADVEGRLKDICVLKEIGVN 460 Clostridium cellulolyt...
WP_012200690 390 IEKVQTVMNPGQVTDEQCKKCWVINHCSLCAAFS-DDLTGLSQKVRLSNCPKSRSRYEETLKTICFLKEAGYD 461 Clostridium phytoferme...
WP_011860654 401 IEKAEKLLNIGKLYEEQCSDCWAYSYCDICIAKI-DDTKCNENEIKPHDCDRIRHSTENNMKDYCVLKSLGYQ 472 [Clostridium] difficile
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap