Conserved Protein Domain Family
dnd_assoc_4

?
TIGR04062: dnd_assoc_4 
dnd system-associated protein 4
A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein fam ily are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of species such as Nostoc sp. PCC 7120, Geobacter uraniireducens Rf4, and Roseobacter denitrificans OCh 114. [DNA metabolism, Restriction/modification]
Statistics
?
PSSM-Id: 274953
Aligned: 11 rows
Threshold Bit Score: 163.669
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
EAW38034      41 NRIRVAKDKADFVKALTESEGKTGP-FQTYADVIVFAATLGIRRKKRIPLEAVskREPSPISLEIFISRGYDF-VIKLIA 118 Lyngbya sp. PCC...
EAZ91897       4 NRIRISKDKSELVQSLVDFGGGVGP-FQTYADVITFAATLGGKYNKRIPLNIIs-KEPAPISLEIFVSRGYDA-VIKLLA 80  Cyanothece sp. ...
EDY03974       4 NRIRIAKDKADLVKALVDDSGGKGP-FQTYADVMAFAASYGAKCKKRVPLNVIa-KEPAPISLEIFISRGYDS-LIKLLA 80  Cyanothece sp. ...
EAW46157       4 NRIRVAKDKAELVKQLLASKDTTGP-FQTYVEVMVFAAALGVKHKKRVPLGEFtkREPSPIPQENFASLGHDL-IINLLG 81  Nodularia spumi...
WP_011611752   2 NRIRIAKDKADLVKALTESEGKTGP-FKTYADVIVFAASLAIKKKKRIPVTEIsiREPGPINIEVFWSRGYEN-IIKLIA 79  Trichodesmium e...
WP_012264383   4 HRVRIARDKGEFVQSLVNFNQGIGP-FQTYADVIAFAAALGVKYQERVAIENVa-KEPSPINLEIFISRGYDT-LIKLLA 80  Microcystis aer...
WP_012410815   4 NRIRVAKDKAELVKSLVASKDTTGP-FQTYVEVMVFAAALGVKYKKRIPLDVIs-KDLSPLRQDYFTSSFT-L-LINLLA 79  Nostoc punctiforme
WP_011567107  15 TRVRRPAEFEEMLSELRDE----GI-FPTFKDTLVFAAALGFRRGNRKPFQ----KSSEPIDLEVFRGDFDRT-IMSMIA 84  Roseobacter den...
WP_011939344  97 KRIQRANDKEEIIKTLMSD--QVGV-FKEIWKLLLFAAQVGMRNDKRLPLKAV--DAGKGIDQSTFGNCPAWPgVLYLMT 171 Geobacter urani...
WP_015949511   3 RRIAPPSELEYILDKLVDHAEGKEPlFASKQKAMMFAAGLGWKKKERTELS----KRGTSIRFDIFEKAIDDA-FINAMA 77  Desulfatibacill...
WP_012083046   3 DRIFADQDKRYLFEKLCLDKKE-NI-FNSNKDLILFAAALGYKHNQKFPLK----KRDTEIPLAVFQRDKKDFyFIDIIA 76  Nitratiruptor s...
EAW38034     119 FLETNDSQILSPFDTDSEEKRAIIFEEYANGGLEVLREEC-RGAVDYSDRLLLLLMSERDRETQlkQDQEFDLTRFL 194 Lyngbya sp. PCC 8106
EAZ91897      81 IAETNDPHVLSLYDTDAENQRVQIFEEYANGGLEQLQEEL-KGIVDYSDHLLLLLNLERFPSNT--PEDEFDLSRFL 154 Cyanothece sp. CCY...
EDY03974      81 IADTNDPKILSAYEAETEAKRVTIFEEYANAGLENLREEL-RGTVDYTERIVLMLSLEKLPNSC--GDEEFDLSRFL 154 Cyanothece sp. PCC...
EAW46157      82 ITETKDIQILSSREEEYEDQRTQIFEEYANGGLEILQNEL-RGAVDYSERLLLLLISEKDAQEQ--SDEEFDLSKFL 155 Nodularia spumigen...
WP_011611752  80 IADTRDTKILSQTNEEIEENRIKIFEEYANGGLEILQDEL-RGAVNYSERLLLVLISERYQKPQ--AEAEFDLTKFL 153 Trichodesmium eryt...
WP_012264383  81 VNEFQDTKILSLHGVDSEALRLTIFEEYANAGLARLEREL-RGAVDYTERLLLIISQERFREIT--ATTEFDLGRFL 154 Microcystis aerugi...
WP_012410815  80 ITETENIKILDDDNV-ADEQRIHIFEEYANGGLGIIQNEL-RGAVDYSERILLILISKRFDDSS--IEEEFDLTKLL 152 Nostoc punctiforme
WP_011567107  85 IEENSDPKMLAP---SNEAERVLCFEEYANGGLEIMKREIsDGKQDWREGLLSLIHREEGDQTI--LDDITELANF- 155 Roseobacter denitr...
WP_011939344 172 LAETQNSNCLSG-SAEAEDDRVSVFQEYANGGLEIL-RDFfTGRPLDLDGLLAFIETQKEESAG-----RLDLELTI 241 Geobacter uraniire...
WP_015949511  78 LAETNDLEILSS---EKDDERAKIFEEYAHTGMIEIAKKCyETAGDPLETLLYLANETRIDEDPelPGMDPAILKSL 151 Desulfatibacillum ...
WP_012083046  77 LGDLEDISILDWDNGDIVDKKLGIFEEYANAGLVIIEHKLfRESGDVYDNLLQLIYK-EINEKE--EDEEFNLSDLI 150 Nitratiruptor sp. ...
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap