Conserved Protein Domain Family
rSAM_NirJ1

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TIGR04054: rSAM_NirJ1 
putative heme d1 biosynthesis radical SAM protein NirJ1
Members of this radical SAM protein subfamily, designated NirJ1, occur in genomic contexts with a paralog NirJ2 and with other nitrite reductase operon genes associated with heme d1 biosynthesis, as in Heliobacillus mobilis and Heliophilum fasciatum. NirJ1 is presumed by bioinformatics analysis (Xiong, et al.) to be a heme d1 biosynthesis protein by context, perhaps involved in conversions of acetate groups to methyl groups in conversion from uroporphyrinogen III. A very closely related protein, involved in alternative heme b biosynthesis, occurs in Desulfovibrio and in methanogens. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]
Statistics
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PSSM-Id: 274946
Aligned: 8 rows
Threshold Bit Score: 724.597
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012283026   2 IGVSKLLCGVENFGDSLRYAHGSKGQRDGAVAGYGPVVAWNVSRTCNLHCIHCYSDSDEIEYPGELTTKEAIRFIDDLAD 81  Heliobacterium ...
WP_012032145   2 ISVTRLLCDTGYFGDTLRYSTGSKGQVHGAIEGHGPVVVWNSTRTCNLRCIHCYSSSESRKYDGELTTAEARRFIDGLAE 81  Pelotomaculum t...
WP_011878480   2 ISISKLLCDTQNYGDSLRYDHGAKGQVHGAVAGHGPVVVWNTTRTCNLRCRHCYSESDSKKY-NELNTQEAKQFINDLAE 80  Desulfotomaculu...
WP_011460179   2 ISLTKLLFNTEYFGDSLRYSKGSKGSMHGTTSGSGPVVVWNSTRTCNLQCAHCYMESDAQKYQGELTTEEAKRFIDDLAD 81  Desulfitobacter...
WP_011971204   2 ISVTKFLLGTSHFGDSLRYRHCTEKNPHGTSPGHGPVVAWNITQTCNLNCIHCYMNSANKKYEGELTHEEALGFIDDLGG 81  Alkaliphilus me...
WP_012058238   2 ISITKLLCNSNNYGDSLRYVEGAAIEKYGVSPGRGPVVAWNCTKTCNLKCKHCYASSDNKRYDDELTLDESKKFIDDLKD 81  Clostridium bei...
WP_011988944   2 LGITKLLCESENFGDRLRYASGAGSEKSGAAKGKGPVVVWNCTNSCNLKCRHCYADSQNKKFEEELDSKEAKYLIEDLAE 81  Clostridium klu...
WP_010966081   2 IGISKLLCSSESYGDKLRYVKEAKNQKNGATSNLGPVVVFNCTKTCNLRCKHCYAGSDGKTYKDELSTEEAYSLIADLSD 81  Clostridium ace...
WP_012283026  82 FNVPVLLLSGGEPLMRPDIFDLVAHATKRNIRVTFSTNGTLITPDVAKEIKKYGVGYVGISLDGIGENNDKFRGKKGAFE 161 Heliobacterium ...
WP_012032145  82 FKVPVLLFSGGEPLLRDDLFELAAYAGERGIRPTISTNGTLLDLDTVKALKKLGIGYIGISLDGIGENNDRFRGCSGAFQ 161 Pelotomaculum t...
WP_011878480  81 FKVPVILFSGGEPLVRPDFFELAGYATQKGIRTTISTNGTLITPEAAARIKDIGVGYVGISLDGIGEVNDTFRGRKGAYE 160 Desulfotomaculu...
WP_011460179  82 FKVPVLLFSGGEPLIRPDFFELAEYAAAKGIRPTLSTNGTLITREVAQRIKNIGVGYVGISLDGLREVNDKFRGKQGAFQ 161 Desulfitobacter...
WP_011971204  82 FKVPVLLFSGGEPLIREDFFALAQHASKLNIRPTVSTNGTLISRKVAETLKSIGVGYVGISLDGLKDVNDRFRAQAGAFD 161 Alkaliphilus me...
WP_012058238  82 FNVPALLFSGGEPLMKENILELLDYASQRKIRSTISTNGTLLDKDVCKSLKKINLGYVGVSLDGIGSNHDAFRGVNGAFD 161 Clostridium bei...
WP_011988944  82 LKVPVLLISGGEPLMREDLFELLNYAKNYNIRSTISTNGTLIDKRTAKDLKLNGVSYVGISLDGIGTNHDKFRGVIGSFN 161 Clostridium klu...
WP_010966081  82 FKVPVIIFSGGEPLIRKDIFELIEFAKKNNIRSTLSTNGTLIDKETAKKIKKAGVSYVGISIDGIGEKNDDFRGKKGAYD 161 Clostridium ace...
WP_012283026 162 DALAGIRNCLAIGQRVGLRFTINRHNFNDIENIFNLIEEEKIPRVCFYHLVYSGRGSNMTEEDVSHAESRAFMDLLMEKA 241 Heliobacterium ...
WP_012032145 162 AALKGIRNCMAAGQGVGLRFTINRHNYKDLNAIFDLVEAENIPRVCFYHLVYAGRGSKMVEEDITREEARAAMDLIMERT 241 Pelotomaculum t...
WP_011878480 161 AALAGIRNCLAVGQRVGLRFTINRHNHTELNQIFDLIEQENIPRVCFYHLVYSGRGSEMIKEDISLEESRAVLDLIMERT 240 Desulfotomaculu...
WP_011460179 162 AAMAGIQNCVAVGQRVGLRFTINSHNYAELDKIFDFIEEENIDRVCFYHLVYSGRGNQMIAEDVTPEQSRQAMETIIRRT 241 Desulfitobacter...
WP_011971204 162 AALTGIENCVAVGQKVGLRFTINRHNVKQLNDIFDLVEKMNIDRICFYHLVYTGRGSTMVAEDISHEESRQAMDLIIERT 241 Alkaliphilus me...
WP_012058238 162 SALRGIRNCIEVDQKVGLRFTINKNNYKELEDIFKLIKEEKIPRVCFYHLVYSGRGSKMVDEDISKEETRQALDLIISKA 241 Clostridium bei...
WP_011988944 162 KSLEGIRNCVEIGQKVGLRFTINKSNYHQLEDIFYLIKEEKIPRVCFYHLAYSGRGNAMAREDITFEQKRQALDIIMDRA 241 Clostridium klu...
WP_010966081 162 KAIEGIRNCKEVGQKVGLRFTINQYNYGEIESIFKLIKKEEIDRVCFYHLVYSGRGSSMINKDISNKEARAAMDLIMDKT 241 Clostridium ace...
WP_012283026 242 VDFFNRGFNCELLTVDNHADIVYLYLKTKDKNPELAEKIWKLMQLNGGNRSGIAFANVDSQGFVHPDQFSQNHTFGNVKE 321 Heliobacterium ...
WP_012032145 242 LNFHRRGLQKEVLTVDNHADGVYIYLKLKKTDPQRADKVLELLRLNGGNRTGIAIGAVDWYGNVHPDQFTQNHTFGNVRE 321 Pelotomaculum t...
WP_011878480 241 LDFHRRGLDKEILTVDNHADAIYLYLKLLKENPAQAQKVLELLSRNGGNRTGIAIGEVDWEGNVHADQFTRNHRFGNVRE 320 Desulfotomaculu...
WP_011460179 242 IDFEERGLRKEILTVDNHCDGVYLYLRTLKDDPEKAQKIKELISMNGGNRSGIAFGEVDPLGYVHPDQFTQHITFGNVRE 321 Desulfitobacter...
WP_011971204 242 LDFHRRGLHKEILTVDNHADGIYIYQKLKEMDPSRADEVYRLMKINGGNRSGIAFANVDSTGNVHPDQFTQNHLIGNIRE 321 Alkaliphilus me...
WP_012058238 242 IEF---GPSVEILTVDNHADAVYTYLKSLEKFKDKSDNILKLLKTNGGNRSGMAFANVDFFGNVHPDQFTWQHTFGNVKE 318 Clostridium bei...
WP_011988944 242 VRF---GKDVEILTVGNHADAVYLYLQVKKKYPHLRDRIWDLIQTNGGNRSGMALANIDFKGHVHADQFTQQHSFGNIRE 318 Clostridium klu...
WP_010966081 242 LEL---GNKVEILTVDNYADAVYLYLKAKDKFKDKEEDILKFLEINGGNRSGIAIANVDYRGNVHPDQFTSNHSFGNVKD 318 Clostridium ace...
WP_012283026 322 RPFKEIWTDTaSNPILAGLKDRKPLLKGRCAKCKWLNVCNGNFRPRAEAVTGDFWESDPACYLTDEEI 389 Heliobacterium modesticaldum
WP_012032145 322 RKFGEIWTDL-SHPVLAGLKNRKPLLKGRCAACRWLDICNGNFRARAEAVTGDFWESDPACYLTDEEI 388 Pelotomaculum thermopropion...
WP_011878480 321 RKFGEVWTDL-SHPILAGLKDRKPLLKGRCAQCKWLNLCNGNFRARAEAVYGDFWMEDPACYLTDEEI 387 Desulfotomaculum reducens
WP_011460179 322 RKFGEIWTDL-NHPILAGLKDRKPLLKGRCARCQYLNNCNGNFRTRAEAVTGDFWESDPACYLTDEEI 388 Desulfitobacterium hafniense
WP_011971204 322 RPFSEIWTDE-SHPILRGLKNRKSLLKGRCGECQWVDLCNGNFRARAEAVTGDFWGSDPACYLTDEEI 388 Alkaliphilus metalliredigens
WP_012058238 319 EKFGSIWRNS-ENEILNGLRNRKKLLKGRCSSCKWLNVCNGNFRTRAEAVHNDFWAEDPACYLTDDEI 385 Clostridium beijerinckii
WP_011988944 319 RKFSDIWKNP-SNPLAVGLRNRKSLLKGRCSSCKWLNVCNGNLRVRAEAATGDFWNSDPSCYLTDKEI 385 Clostridium kluyveri
WP_010966081 319 KKFKDIWTDY-SNSILKGLKDRKKLLKGRCGKCKWLSICNGNFRTRAEAVTGDFWASDPACYLTNNEI 385 Clostridium acetobutylicum
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