Conserved Protein Domain Family
rSAM_NirJ

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TIGR04051: rSAM_NirJ 
heme d1 biosynthesis radical SAM protein NirJ
Heme d1 occurs in the cytochrome cd1 subunit of nitrite reductase in species such as Pseudomonas stutzeri. NirJ is a radical SAM protein involved in its bioynthesis. In a number of species, distinct genes NirJ1 and NirJ2 are found in similar genomic regions; this model describe authentic NirJ from genomes with NirJ only. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]
Statistics
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PSSM-Id: 188566
Aligned: 12 rows
Threshold Bit Score: 643.271
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011044958  29 GPVVIWNLIRRCNLQCKHCYSTSLDIDFKDELSTEQVKTTIDDLKVAHVPVLILSGGEPLLRPDIYEITEYAKQKGFYLA 108 Colwellia psych...
WP_011786572  30 GPVVIWNLIRRCNLTCKHCYSISADIDFKGELTTQEVYKVMDDLKAFGVPVLILSGGEPLMRPDIFDISHRAKAMGFYVG 109 Marinobacter hy...
WP_011310584  25 GPVVIWNLVRRCNLTCKHCYSISADKDFPGELGTDEVFAVMDDLKRFRVPVLILSGGEPLLRPDIYAIAQRAKDMGFYVG 104 Thiobacillus de...
WP_011236321  25 GPVVIWNLIRRCNLTCKHCYSISADTDFPGELSTAEVFGVMDDLKAFSVPVLILSGGEPLLRPDIFEIGRHAKKMGFYVG 104 Aromatoleum aro...
WP_011805157  30 GPVVIWNLIRRCNLTCKHCYALSADHDYAGELSLQEVYTVMDDLKAFGVPALILSGGEPLLRPDLFEIAARARDLGFYTG 109 Acidovorax sp. ...
WP_011398194  18 APVVIWNLIRRCNLTCRHCYSISADIDFPGELTTAQVFDTLEDLKQMGAPAVILSGGEPLLRKDIFLIGAYAKSLGLYVG 97  Hahella chejuensis
WP_011914559  29 PPVVIWNLLRRCNLTCRHCYATSADSEFRDELDTAEALRVIDDLHEAGVRVLILSGGEPLLRGDIFQLADYARDKGFFVA 108 Pseudomonas stu...
WP_011567820  25 RPVVIWNLTRRCNLKCRHCYTTSSDNIFPGELSTKQALGVIDDLAEFKIPALILSGGEPLSRGDIYELAQYAREKVRYLA 104 Roseobacter den...
WP_011242006  26 KPVVIWNLTRRCNLKCRHCYTVSADVDFPGELSHEQAMETLEDLGRFKVPAIILSGGEPLDRFDFFDIAMRARQMVPMLA 105 Ruegeria pomeroyi
WP_031804782   2 APVVIWNLLRRCNLTCKHCYSTSADSDFRGELETAEILRGIDDLRAAGVRVLILSGGEPLMHPDLFEIAAHARQAGMFVA 81  Pseudomonas aer...
WP_012179833  25 KPVVIWNLTRRCNLKCKHCYTVSADVDFPGELTAAQARETLEDIGRFKVPALILSGGEPLLRDDLFALAKRARALTRVLA 104 Dinoroseobacter...
WP_010810853  25 GPVVIWNLIRRCNLNCRHCYATSADTDFKGELDTAEALRVLDQLRDARVPALILSGGEPLLRPDLYEIAARARALGFHLS 104 Burkholderiaceae
WP_011044958 109 LSTNGTLINEDNIEAIKAAEYQYVGISIDGLEEFHDEFRRQKGSFKTSMHAIKLCKDAGIKVGMRLCLTRENFKDLPAML 188 Colwellia psych...
WP_011786572 110 LSTNGTLITEDNISKIAEVGYDYVGISIDGLEATHDEFRQKKGAFKESMHAVALCKQAGIKVGLRFTLTQDNYPELPAML 189 Marinobacter hy...
WP_011310584 105 LSSNGTLIDEHNIERIAAIGFDYVGVSLDGIAATHDRFRRMDGAFDASLRGIRLCRDRGIKVGIRFTLTQDNAQDLPALL 184 Thiobacillus de...
WP_011236321 105 LSSNGTLIGESNIDRIDEIGFDYVGVSLDGIGATHDRFRRLEGAFDASMRGIRLCAARGIKVGVRYTMTEDNAADLPALL 184 Aromatoleum aro...
WP_011805157 110 LSTNGTLIDAPMAARIAGAGFDYVGISLDGLKPTHDKFRRLDGAFDRSLAAIRHLATHNVKVGLRFTMTALNAHDLPALL 189 Acidovorax sp. ...
WP_011398194  98 LSSNGTLMNRDTAAAISDTGFDYVGVSIDGTEATHDEFRQMPGGFKAALAGVAHCKAAGVKVGLRFTLTENNAGQLPAML 177 Hahella chejuensis
WP_011914559 109 LSTNGTLIDEGNIARIAAARFDYVGISIDGLEAVHDDWRQLKGSFAASMHAIDLCRQHDIRVGLRTTLTQNNYPQLPALL 188 Pseudomonas stu...
WP_011567820 105 LSTNGTRIDAEAVEKIADIGFNYVGISIDGVGATNDWFRGQEGAFDEALAGARLCKEKGIKVGLRFTPTEDNAEQLPAIL 184 Roseobacter den...
WP_011242006 106 LSTNGTRIHGETADRIADVGFSYVGISLDGIGATNDWFRGVEGAFADALRGVRACKARGIKVGLRFCLTEGTQHHLPNLL 185 Ruegeria pomeroyi
WP_031804782  82 LSSNGTLIDEGNIQRVAEARFDYVGISLDGLRETHDRFRQKQGSFDAALAAMRLCREADIRVGMRTTLTEENAAQLPALL 161 Pseudomonas aer...
WP_012179833 105 LSTNGTGVIGSKADRVAEIGFDYVGISIDGIGATNDAFRGVIGAYEQALAGVRSCKRRGIKVGLRFTITEQNESQLPELL 184 Dinoroseobacter...
WP_010810853 105 LSSNGTLLDAGHAARLAAAGFDYVGVSLDGLPATHDRFRRSDGAFAQALAGLRAARAAGLRVGVRMTLTEANAAQLPDLV 184 Burkholderiaceae
WP_011044958 189 NLMEENSVDKFYLSHLNYSGRGKRTAENDAMFKMTKDAMELLYERAWTHIN-QGIETDFVTGNNDADGPFLLQWASKQFa 267 Colwellia psych...
WP_011786572 190 EMLDEHQIDKFYLSHLNYSGRGGRNKKRDAWYDMTRDAMNLLFNHCHDELR-RGIEREYVTGNNDADGPFLIEWAKEHY- 267 Marinobacter hy...
WP_011310584 185 QLMEDERLDKFYLSHLNYAGRGNTNRKHDVVHQATRQAMDLLFDTCWRYQQ-AGLHKEFVTGNNDADGVYLLFWIRRHF- 262 Thiobacillus de...
WP_011236321 185 RLVEDEGIDKFYFSHLNYAGRGNKHRGDDAHHRTTREAMDLLFDTCLALHR-RGIDKEFVTGNNDADGVYMYHWVARRF- 262 Aromatoleum aro...
WP_011805157 190 QLMKDEGANKFYFSHLNYAGRGNIHRDKDAHHQATRQAMDLLFNHAWADAQ-AGSLDDYVSGNNDADGPYLLQWAREHL- 267 Acidovorax sp. ...
WP_011398194 178 DLMRERDIDKFYLSHLNYAGRGLRHRKRDAFHQTTRDAMLLLFERAHEDVL-AGKSNEYATGNNDADGPFLLQWAAQRY- 255 Hahella chejuensis
WP_011914559 189 ALMREHDVQKFYLSHLNYSGRGKRSRKADAHHQMTRDAMRQLFEQAWDDVQ-QGRETDFVSGNNDADAILLLQWVEQHL- 266 Pseudomonas stu...
WP_011567820 185 DLCEAEGIDKFYMSHLVYAGRGNKNRGEDAGHARARSCVDLLLDRAWSALQ-QGRHFEVVTGNNDADAVRFLNWASDRFa 263 Roseobacter den...
WP_011242006 186 QLCDDEGVDKFYLSHLVYAGRGDKNRGEDAAHLRTRHAMDLLLDRAWVAAA-EDMPLDIVTGNNDADAGYFLDWVRRNFd 264 Ruegeria pomeroyi
WP_031804782 162 DLMRELDVQKFYLSHLNYSGRGRRSRALDAHHRRTREALALLFERADQDIR-QGRDSDFVTGNNDADAILLLDWLKRRR- 239 Pseudomonas aer...
WP_012179833 185 KLCDDEGVDKFYLSHLVYAGRGNKNRGEDADHARTRRAMDLLIARALESAEgRGHPLEIVTGNNDADAVYFLNWAKANF- 263 Dinoroseobacter...
WP_010810853 185 ALTEHEGIDKFYLSHFNYAGRARSHRAEDAHHARTRAALDWLFDHVWQRTQ-QGHAGDFVTGNNDADGVYLLYWIARRL- 262 Burkholderiaceae
WP_011044958 268 eeyP-EAIANLKQRLINWGGNSSGINVANIDNTGTIHPDTYWWNHPIGNVTTEKFSDVWRDTQDPLMLGFRQTPRPVKGR 346 Colwellia psych...
WP_011786572 268 ---P-DQVDALTQRLTNWGGNSSGVNISNIDNLGVVHPDTFWWDHNLGNVRETPFSKIWSETTDPLMQGFRQHPRPVKGR 343 Marinobacter hy...
WP_011310584 263 ---P-AMEGHMRAKLAQWGGNSSGVNIANIDNLGNVHPDTFWWNYSLGNVKERPFSEIWPDTSDPLMAGLKASPRAVKGR 338 Thiobacillus de...
WP_011236321 263 ---P-ECAEHIRAKLLQWGGNASGVNVANIDNLGVVHPDTMWWHVPLGNVRERPFSEIWSDLSNPLMAGLKRHPRLLGGR 338 Aromatoleum aro...
WP_011805157 268 ---P-QWEDALRQRLVAWGGNASGQMVANIDNLGHVHPDTMWWHHDLGSVRERPFSQIWNDTSDPLMAGLKQHPRPVQGR 343 Acidovorax sp. ...
WP_011398194 256 ---P-HRLQELQARLAHWGGNASGVGIANIDNTGEVHPDTFWWNHNLGNVKERPFSTIWRDTEDAFMQGLRAQPRPLHGR 331 Hahella chejuensis
WP_011914559 267 ---P-EHRERLEGMLRAWGGNASGSGIANIDNIGDVHPDTYWWQHTVGNVRRQRFSDIWLHEPAPLLQELRQHPRAVNGR 342 Pseudomonas stu...
WP_011567820 264 ---P-EQIDHLTAHLQAWGGNSSGVGVANIDPTGKVHPDTYWSDYTVGNVKSDTFSDLWTG-SDEMLALLRTRPRPLKGR 338 Roseobacter den...
WP_011242006 265 ---A-AKVAHIRAHLAAWGGNSSGLGVANIDNLGRVHPDTYWSDYTVGNVKTAPFSQLWTG-DDPMLALLRTRPRPLKGR 339 Ruegeria pomeroyi
WP_031804782 240 ---P-QQLARLCELLLDWGGNASGEGIANIDNTGEVHPDSYWWHHSVGNIRHQRFADFWFERPDPLLLQLRQRPRPVVGR 315 Pseudomonas aer...
WP_012179833 264 ---PaAQVAHLRKHLEAWGGNASGVGVANIDTQGDVHPDTYWSEYTVGSVKQTPFSELWTG-PDPMLAELRRRPRPLKGR 339 Dinoroseobacter...
WP_010810853 263 ---P-HRLVDMRQRLEHWGGNATGVGVANIDNLGNVHPDTMWWHVTVGNVRERPFGEIWASRADPLMAGLASTPRPLQGR 338 Burkholderiaceae
WP_011044958 347 CASCEHLAICGGNTRTRAFAQS-GDAWAEDPGCYLDDDEIG 386 Colwellia psychrerythraea
WP_011786572 344 CADCKYLNICNGNTRVRAYNVS-GDFWEEDPGCYLTNEEIG 383 Marinobacter hydrocarbonoclasticus
WP_011310584 339 CGECAYFDICGGNTRVRAYQLT-GDPWQEDPACYLDDEEIG 378 Thiobacillus denitrificans
WP_011236321 339 CGKCKFLAVCNGSSRVRAQQIT-GDPWVEDPACYLSDEEIG 378 Aromatoleum aromaticum
WP_011805157 344 CAGCQYLTICNGNTRVRAQQLT-GNPWFEDPGCYLTDAEVG 383 Acidovorax sp. JS42
WP_011398194 332 CGDCAARHICNGNTRVRAFTQSgGDFWAEDPGCYLTEAEIH 372 Hahella chejuensis
WP_011914559 343 CAECRWLSICNGNTRTRAWAQ--GDLWAEDPGCYLSDEEIG 381 Pseudomonas stutzeri
WP_011567820 339 CGACAHQSVCGGNTRIRALQLT-GDPWEEDPACYLSDAEIG 378 Roseobacter denitrificans
WP_011242006 340 CGACTLKDVCGGNTRIRALQLT-GDPWAEDPACYLSDAEIG 379 Ruegeria pomeroyi
WP_031804782 316 CSQCRWLDICNGNTRTRAWAG--GELWGEDPGCYLSDQEIG 354 Pseudomonas aeruginosa
WP_012179833 340 CGACAHQAVCGGNTRIRALQLT-GDPWAEDPACYLTAAETG 379 Dinoroseobacter shibae
WP_010810853 339 CAGCAYRAICNGNTRVRAFALT-GNAWAEDPGCYLSDAEIA 378 Burkholderiaceae
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