Conserved Protein Domain Family
tatD_link_rSAM

?
TIGR04038: tatD_link_rSAM 
radical SAM protein, TatD family-associated
Members of this family are radical SAM proteins found in about 5 percent of microbial genomes. A portion occur as gene fusions with, or adjacent to, members of the TatD family of hydrolases (pfam01026). The TatD family may have several paralogs per genome, including TatD itself from E. coli (a soluble protein not actually part of the twin-arginine translocation complex), which appears to act in quality control for TAT, directing turnover of misfolded TAT substrates. The functions of TatD family hydrolases in general (other than TatD itself, which may be exceptional within its larger family), and of this radical SAM domain protein modeled here, are unknown.
Statistics
?
PSSM-Id: 274936
Aligned: 20 rows
Threshold Bit Score: 275.266
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
EAR59631           20 NYTYLIRNSLYINLTDRCTLACQFCPKHNgTTEVKGHELYLSKRPEVEEIIGLIGNPTDYDEVVFCGYGEPTVRLKALLE 99  Neptuniiba...
EEJ79799           10 VLWYEIRGSLYLNISDRCTLVCQFCPKTHgDPQVHQYNLALQKQPKSQEVIASLPDLSQYQEVVFCGFGEPTLRLKPLIE 89  Kangiella ...
EDV72934          264 TIAYMIRNSLYLNVTNRCSNRCTFCPKFD-DFAVKGHELKLSHEPSFAEVIAAVDRATGFEEVVFCGYGEPLVRLDLVKE 342 Geobacter ...
EAT14989          266 KIAYRIRDSLYLNITNRCSNRCSFCAKFR-DFHVKGHQLKLDHEPDFDEVIAAIGDPSGYEEVVFCGYGEPLLRLDLVKE 344 Desulfurom...
REF_jgi:Pcar_1695 269 KIAYRIRNSLYLNITNRCSNACVFCAKFR-DFAVKGHQLKLDHEPSVEEIKQAIGDPRNYEEIVFCGYGEPLLRLDVIRE 347 Pelobacter...
WP_012154060        7 TLVYDIRDSRYLNITGRCTLRCQFCPKHNgSKQVHQYQLDLNRQPKSQELIAQLGDVSEFDEYVFCGYGEPTLNLTTLLE 86  Shewanella...
WP_011760853       17 TLVYDIRHSRYLNITGRCTLRCGFCPKQQgSRQIHQYQLALDKQPGVDDLLPLLGDVDTFDEYVFCGYGEPTLNLPTLLG 96  Shewanella...
WP_011939374      268 QIAYRIRNSLYLNITNRCSNRCSFCAKFE-DFTVKGHYLLLDHEPDFSEVMAAIAAHKGYDEVVFCGYGEPLLRLDLIKE 346 Geobacter ...
WP_011636144       15 TLVYDIGKHRYLNITARCTLRCQFCPKHNgSKQVHDYDLSLTKRIIAEDVLPLLGNVHEVEEYVFCGFGEPTLNLDCLLQ 94  Shewanella...
WP_011713519      265 VLAYPIGNRLYMNVTHGCTLKCQFCPKWQ-APEVHAFNLALTGNPSSAELIAAFGELDAFDEIVFCGYGEPTLRLQVMLE 343 Magnetococ...
EAR59631          100 IAHWVKGNGGKTRINTDGLGSLFHKRDIVPELAECIDALSVSLNAQNEAVYQQHCQPSL-P-NSYAAVQAFIKRASELIP 177 Neptuniiba...
EEJ79799           90 IARYCKEQGVKTRLNTDGLGCLVHKRNIIPELSEVIDTVSVSLNAQNEAIYKRHCHPQL-S-NAYSAVKEFIKHSVGAFK 167 Kangiella ...
EDV72934          343 VAAELKRRGIKVRVNTDGQANLVHGRNILPELAGLVDVLSVSLNAANAEDYQRLCNTPF-GaAGFQGVCDFLKEAPKHVP 421 Geobacter ...
EAT14989          345 VATWLKQRGIKVRINSDGQANLVYQRNILPELEDLVDELSISLNAPNTADYQRICQSCF-GdEGYDGVKEFIRQAPTYIP 423 Desulfurom...
REF_jgi:Pcar_1695 348 IGTWLHRQGVPVRINTDGQANLVYGRNILPELGTFVDAISISLNAADAATYQKICQSCF-GeDGYQAVKDFIKEAKFHIP 426 Pelobacter...
WP_012154060       87 VAKEIKLRGGRIRVNTDGLGNLFHRRNILPELATCVDSLSISLNADTEALYQQHCRPKL-A-GAYPALLEFIKLAPQYIK 164 Shewanella...
WP_011760853       97 VARAIKSQGGRIRVNTDGLGNLFHKRNILPELADCVDALSVSLNAQDEFTYLKHCQPRL-K-GSWQAVNDFIRMAPAYIK 174 Shewanella...
WP_011939374      347 VAAALKKQGMRIRINTDGQANLVYGRNILPELAGLIDTVSVSLNAADEDTYDLLCNTPFsK-DGFTGVCTFLREAKQYIP 425 Geobacter ...
WP_011636144       95 VAHAIKVQGGKVRLNTDGLGNHFHRRNILPELSQCIDSLSISLNADTPESYQQHCRPKL-A-NSYTALLDFIKLAPSYIS 172 Shewanella...
WP_011713519      344 VAAAAKQRGKRVRLNTDGLANFVYGEDIAPKMAGLVDAISISLNAQNAELYDRHCVPGK-T-GAYAGLLSFVDAVKPYVP 421 Magnetococ...
EAR59631          178 DVQVSAINgLEGVDVVKCRELTE-GLGAEFKQRELD 212 Neptuniibacter caesariensis
EEJ79799          168 AVRVTAIDgLAGVDIKECKKIAE-NLGAEFVCRYLD 202 Kangiella koreensis DSM 16069
EDV72934          422 QVTASAVT-VPGLDVGKVRELAL-SLGVDYREREYA 455 Geobacter sp. M21
EAT14989          424 KVIASAVT-VPGIDIKACEQLAE-ELGVEFRTRIYN 457 Desulfuromonas acetoxidans DSM 684
REF_jgi:Pcar_1695 427 SVTASVVA-MPGIDVEACRHIVEqELKVNFRVRPYN 461 Pelobacter carbinolicus DSM 2380
WP_012154060      165 DVQVSAINgLEGVDIQACRKIVE-SRGASFKQRQLD 199 Shewanella pealeana
WP_011760853      175 RVEVSAIDgLPGVDIPACRALVE-AAGCTFKHRKLD 209 Shewanella amazonensis
WP_011939374      426 QVIASAVT-VPGLDIAEVKRLAE-SLGVEFREREYT 459 Geobacter uraniireducens
WP_011636144      173 QVQVSAINgLANVNIDRCRDIAE-RNGVVFKQRELD 207 Shewanella frigidimarina
WP_011713519      422 EVTLTAISgLEGVDIPACAAIAR-QKGVKFRARQLD 456 Magnetococcus marinus
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap