Conserved Protein Domain Family
toxin_SdpC

?
TIGR04032: toxin_SdpC 
antimicrobial peptide, SdpC family
This protein family contains the antimicrobial peptide SdpC, used in cannibalistic killing by Bacillus subtilis, and related sequences in species as distant as Myxococcus xanthus from the Deltaproteobacteria. A conserved gene neighborhood includes proteins associated with immunity.
Statistics
?
PSSM-Id: 274930
Aligned: 14 rows
Threshold Bit Score: 119.033
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
ZP_03920962   30 ATKNLKYSDSDIVDLLVFSDGPAATNNPelakLLQSNNPDKY--VP---TSEDLDIAQDL---LETEISDFHQEVTVPIQ 101 Corynebacterium...
ZP_04998244   71 PAAGKAYSDRDVVGFLVFGQGKAAEDHP----ALAKKIRDRR--AD---SKVTEEQLSYLmakLHKIDPAFDSNVTEAVQ 141 Streptomyces sp...
BAI87742      36 AKNLHKYSGEEIFAGIVFGQGEISKKFPe---IWNTNDYNV---RN---SDKSKELTQLLiseMKKIDPQYFNDLKKSVY 106 Bacillus subtil...
ZP_06271910   50 PKLSATEDGHQLFAGLFFGQGPVAAKLAa---DGNLNGIEPGv-ND---NPKAVRAVAELvkkIELKSPGIFADFSAKSR 122 Streptomyces sp...
WP_003243360  32 AKENHTFSGEDYFRGLLFGQGEVGKLISn---DLDPKLVKE---AN---STEGKKLVNDVvkfIKKDQPQYMDELKQSID 102 Bacillus subtilis
WP_011556539  38 ITQNQALSGQNLFKGMAFGLGPAAHYFDd---LWQRPEIKAK--LGdetLAKREEAAEAViakMSALDPAFFERFGNDLR 112 Myxococcus xanthus
WP_011245062  29 VNDITKFSGEEIFLGAVLGQGAFAENLKh---LWVKEQYEH---NN---SEEVIAITNPIiaqMRQVDPAYFDTLEEVVY 99  Bacillus clausii
WP_000755293  29 AKDTKHYTGKEIFAGIFFVQGEFAKELNk---DVDVNGIE-G--VN---KAENKIIYAELikqMDKLDSSYFEDLEKAVY 99  Bacillus cereus
WP_013128803  40 PAATGGTGGEEIFRAVLLGEGPLAQKLAasnpELLSKLASAYpqNN---TPQALAAGNLIvdkINAKNPGYFAQFKSATT 116 Tsukamurella pa...
WP_003233030  15 QAKQLEYSGEEIFKGFVFAQGEVGKQLPe---VFNKAMTDKL---N---TKQAKAFANQVvadIKKEDADFFDNLKKAVY 85  Bacillus subtilis
ZP_03920962  102 SGDPYKVTDALDRVSIAIQNIT-AEqt--aQT---PAVSTYGMGWHDANLWVEINGAAVLNGAVYANVALATEAL---VA 172 Corynebacterium...
ZP_04998244  142 AKDPFVVQAGMERLNDDLKKYI-AEdagsiDTstdAADRADGKVWKKSNIVAVANIAAGINVAVGTNVAAGAEVV---VV 217 Streptomyces sp...
BAI87742     107 EKDLKLIDEEFSKGGDLLKEAA-EK----------VNMGSSEHADLVSGKCVETLGAAIFVLVLAAGGAVDYLYV---YN 172 Bacillus subtil...
ZP_06271910  123 SGDPRLVDQAMTAVSQVLIDVS-DS---------------NGSVPGDTGACVVLVVSVAVAAVAVAVATGGFFIN---AA 183 Streptomyces sp...
WP_003243360 103 SKDPKKLIENMTKADQLIQKYA-KK-----NE---NVKYSSNKVTPSCGLYAVCVAAGYLYVVGVNAVALQTAAA---VT 170 Bacillus subtilis
WP_011556539 113 SGNHLVIDQLLTDTRELTVAAA-------------NALRKDAGQAGEINAAALQQVEAGLYLYVETAVAVAIVLI---LI 176 Myxococcus xanthus
WP_011245062 100 NKDYVKTKNLLDEGANMFLSLF-KE------V---HGEMLDSPDTAQPNAIVAYLAVAVSLVVVYSHAAGLTFYL---AA 166 Bacillus clausii
WP_000755293 100 NKDYIKTDELFTKGGKLLNESV-EKln--aSK---IDNNAIDNVQGVAVFPAISVAFTTAAAVAQLAVAVSYVVE---TG 170 Bacillus cereus
WP_013128803 117 SGDPYAVEAAINDGPVQIRSA----------G---ITTKEIETEAPECGVFPFVALAVFHVAAAVTTVGGAVFELaavAA 183 Tsukamurella pa...
WP_003233030  86 SKDALKVDELLKKAGQIVEEKVeAA-----KE---IAASKDDTSRVQAELVNTVDTANYFYYVSYVA-----AAG---AL 149 Bacillus subtilis
ZP_03920962  173 LYVVPgAISYQFPKTK-----GTLDGQNLVAALSEEL 204 Corynebacterium pseudogenitalium ATCC 33035
ZP_04998244  218 VVIVP-AAASYGFDLQq---pNKLDKNNLVAEVAEAL 250 Streptomyces sp. Mg1
BAI87742     173 ------ATKFWGITSNdk--eSKLATEMFVKDVADKL 201 Bacillus subtilis subsp. natto BEST195
ZP_06271910  184 AVINV-VVDSEAPM-------ENLTRDELVAGLTKVL 212 Streptomyces sp. SirexAA-E
WP_003243360 171 TAVWK-YVAKYSSSAS-----NNSDLEAAAAKTLKLI 201 Bacillus subtilis
WP_011556539 177 LT----QIDMTPVMEGpq--sSQLQRDVWVDMLAKRF 207 Myxococcus xanthus
WP_011245062 167 AAVGP-GFNSNG---------TEFDNEQLIYEVVEAA 193 Bacillus clausii
WP_000755293 171 VAVHH-AVKFWAPQENd---gTKLSKEKFLTNVVKVA 203 Bacillus cereus
WP_013128803 184 NAVYA-QNVLWPNAERangtaSSLDRDRFMGQLTKSL 219 Tsukamurella paurometabola
WP_003233030 150 ILIIL-AIDITPIAISd-----NVDREMAIRTLVDEL 180 Bacillus subtilis
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap