Conserved Protein Domain Family
B12_SAM_MJ_0865

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TIGR04014: B12_SAM_MJ_0865 
B12-binding domain/radical SAM domain protein, MJ_0865 family
Members of this family have both a B12 binding homology domain (pfam02310) and a radical SAM domain (pfam04055), and occur only once per genome. This protein occurs so far only in methanogenic archaea. Some species with members of this family have a related protein with similar domain architecture (see TIGR04013). [Unknown function, Enzymes of unknown specificity]
Statistics
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PSSM-Id: 274918
Aligned: 6 rows
Threshold Bit Score: 666.446
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011449130   7 DVMVGAPGLYTYGAMRIGGIIRDAGFHPQITRNISQ---IHGDQVFLSLFSTLHLLDPAVK---EVVKRIQQKGGECIIG 80  Methanospirillu...
WP_010870380  11 RITIYSPEVYTYGAMLIGGILKHKGYNVHLVRKIDKtlfLKSDVIIFSLYSTLHILDKNIReaiDFIKKVRKNKTKVYVA 90  Methanocaldococ...
WP_011695746   2 KIQIISPGVYTYGSMVLGGILRDRGHSVNISKDLRH----DGDVIILSLFSTLQLLDPAIR---EFVSKA---GPPVYCG 71  Methanosaeta th...
WP_011843234   2 EITILSPGIYTYGAMLIGGVLRDAGHRVTLTRTPAV---PADSVLLMSLFSTQHLLDPAIR---DLVRTHRERGGLVYVG 75  Methanoculleus ...
WP_010876795   3 RVTVVTPEHYNYGSMLIAGALRDLGHRVEIRKGFDG---VKSEIVFISLQSTIHLL--RYR---DIINK---MGGFRVVG 71  Methanothermoba...
WP_011019166   2 KVLVISPEYYTYGAIVVAGVCEEHGHSTILRRSPDPealKRADVLILSLHTTLHLLDEDIL---EIARQAHEFGKPVIVG 78  Methanopyrus ka...
WP_011449130  81 GPVSSGPEMVLGELHPDLVVCGEGEEAVRCILDRTGDqtdhadcpNCAYIEDGRVIKTEQKRAQDLSFPLPL-IPDDIAA 159 Methanospirillu...
WP_010870380  91 GCVSTYPEIILNELNVDGVIVGEGEITTPKIIEGDKE--------GLAYKEGDEIVINYPKEKPDLNHPLPL-IPKDIEQ 161 Methanocaldococ...
WP_011695746  72 GPVGICPEMVLGELDVDAVAMCEGEGIIARLVEAGPEgv-----pGVAYREGEEIIRSEPLRMEVIDHTMPL-FPPDLSE 145 Methanosaeta th...
WP_011843234  76 GPVSAAPEMVLGELAPDAVVVGEGEETVIRLVEEGVSda----lpGIAFLDAGRPVVTPPAPPASMDRPLPL-IPDDIGN 150 Methanoculleus ...
WP_010876795  72 GPVSIDPEMVFRYLDVDLVVMGEGEDKVGPVMELAAGnckpedvpGAAFRSPEGIVVSESSPCP-MERPLPL-VPGDISR 149 Methanothermoba...
WP_011019166  79 GPVSQVPELVLERFPNAIVAKGEAETGLPPLLQTLEDegdfedveGIALLRDGEIVDTGWPPPADLDGPSPLkVPRDLGR 158 Methanopyrus ka...
WP_011449130 160 QDIRGAQTYIETHRGCFGRCGFCQVPRVFGRRIRSRELDEILKEVKAFQKKGVRRLALIGGTGSLYRSKE--GeVNSDAF 237 Methanospirillu...
WP_010870380 162 QSIRGANVYIETHRGCLGNCTFCQVPKFFGKTIRSRDVEDVVEEVKAFKRAGAKRIAISGGTGSLYAFKK--S-INRDKF 238 Methanocaldococ...
WP_011695746 146 QSVRGANVYIETHRGCLGGCTFCQVPRFFGRNIRSRSLENIVEEVRELRRMGVKRVAVSGGTASLFGYRN--A-LDKDAF 222 Methanosaeta th...
WP_011843234 151 QSVRGASAYIETHRGCIGGCTFCQVPRFFGRAIRSRPLDRIVEEVKAFSAHGATRLSVSGGTGSLYGSTG--GeMNPEAF 228 Methanoculleus ...
WP_010876795 150 EDIRGASVYIETHRGCPGNCTFCQVPEFFGRNVRSRPLKDIIMEVRELKSSGARRFAISGGTGTLYGSSKfrG-IDEEAF 228 Methanothermoba...
WP_011019166 159 QDVRGANVYIETHRGCPGACTFCQVPEFFGRRVRWKPVEAVLEEVRELTRGGARRFAISGGTVTTYGD-------DEEDF 231 Methanopyrus ka...
WP_011449130 238 ISLLEGISSIMGPKNVSCPDIRADCLTDEVLEAVRAHTIGWIFFGIESGSEKMLGLMQKGIPIDKVRDAIEQCRQYGVKP 317 Methanospirillu...
WP_010870380 239 FELLEKVSEVIGKNNLSVPDMRVDYVDEEILEAIKNYTIGWVFYGIESGSDKILKDMKKGTNREKNLDAIKLAKDCGVKV 318 Methanocaldococ...
WP_011695746 223 IRMLQELSGILGRKNLSVPDMRVDLVDDEILEAIREYTIGWLFFGIESGSDRMLKLMRKGVTVLDNIRAVELARSHGVKV 302 Methanosaeta th...
WP_011843234 229 IGLLRSMAEVMGPKNVSSPDIRVDCISDEILGAVRQYTIGWVFFGIESGSDRVLRLMGKGATVRQVEEAVERCREHGLRV 308 Methanoculleus ...
WP_010876795 229 RDLLRCISEVTGSRNLTVPDIRVDMVSPEILDAISEYTNGWVFYGIESGSRRMLRKMKKGITPDQVVEAVELAREYNLKV 308 Methanothermoba...
WP_011019166 232 VELLKRLADLLGRENVSAPDVRADLLNERLLEAIRDYTIGWIFLGIESGSDRILRAMRKGITVDDVCEAVELARTVGVRV 311 Methanopyrus ka...
WP_011449130 318 AGSFITGYPGEEEEDFQATKDLMEELTLDDVFISIAEPIPSTPLAEVVCSQNPDMDLVSVPHTG-EYAGLHLSEAEARAF 396 Methanospirillu...
WP_010870380 319 AGSFIVAYPTETEMDYLLTKDFIVDAELDDVFVSIAEPIPTTELCDLVLSMPKEENLLYKMHEG-EYRKLGLSEAEARCF 397 Methanocaldococ...
WP_011695746 303 GGSFIVGYPGESREDFEQTLDFMEEAMLDDVFVSIAEPIPGTPLARVALNTPPADNPLFCEHSG-AFRALRLSEAEARCF 381 Methanosaeta th...
WP_011843234 309 AGSFIVGYPGETERDYEATKDLIAALSLDDVFVSSAEPIPATPLADLAVRTPRDKNPAFVPHTG-EYRALSLTESEARCF 387 Methanoculleus ...
WP_010876795 309 AGSFIVGYPGEDDDDYQETLELADELMLDDYFVSIAEPLPGTELGEEVMELPEDENPVFMKSSNrRFDSL----AEERAF 384 Methanothermoba...
WP_011019166 312 AGSFIVGYPGETEDDLEATEELLTELNLDDVFINLAEPIPGTELGRLVTELPEEEIPVLRPGEQ------LETEAGDRAL 385 Methanopyrus ka...
WP_011449130 397 DLMLHADMCRPVPRITQDVHYNAYLEEARKQGADIRNVTRLIRRY 441 Methanospirillum hungatei
WP_010870380 398 DLLIHAEMWKSMPKPLTPQLYNLYLNEARIQGKDIRAITDLLFKY 442 Methanocaldococcus jannaschii
WP_011695746 382 EMMLHGENCKPVPRAISEALYNTYLNEARSQGKDIREVYGLLNKY 426 Methanosaeta thermophila
WP_011843234 388 DLMMHADLFRPQLRLVTDEVYNTYLAEARKQGRDIRAATELILRY 432 Methanoculleus marisnigri
WP_010876795 385 NLLLESYVFRSVPVPMTSRLLKSITEEVRQQQEHIRTVTGCSRES 429 Methanothermobacter thermautotrophicus
WP_011019166 386 QLQLTAFTTLSRPVPLTDDVFHEALHNIREDERKVLRITRFLRGA 430 Methanopyrus kandleri
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