Conserved Protein Domain Family
TIGR03986

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TIGR03986: TIGR03986 
CRISPR-associated protein
Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).
Statistics
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PSSM-Id: 274902
Aligned: 24 rows
Threshold Bit Score: 397.529
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EEK33354      23 PYGLVRIADTPMPAADLHgdhptgDLL---------------RSHDRTVAGTHSGWIDLTLTTLTPTFVGQTLEr----- 82  Nocardiopsis da...
EDX94039      14 PYNFIGLEDFILDKCSDE------EEL---------------LMHERYHEGLKTGCIQYEIEVITPLHISAGKKesgke- 71  Clostridium the...
EDN00809      10 PYNFVPFSNRIMVRYQSPd-----ELP----------------PHDVWDPALKSGEIHVTLEAQTPVLVSD--------- 59  Pseudoflavonifr...
EDT79263      14 PYNFVALPKKAIIAYDTIs-----DIP----------------KHNDMREDLLNGHIDYEIKTKTKTIVCDSKPskgv-- 70  Clostridium per...
EEF14907       5 PYNFVPLNDKIFYPPWVGe----dILK---------------NIHDVPFKDGESGVIELEVTAKSSIFIKDS-------- 57  Campylobacter r...
EEK29567      16 PYNFVSLGEKVIDRGKR-------------------------------EVGTNTGKFKCKLITKSPLFIGGKKI------ 58  Leptotrichia bu...
EEP30999       8 PYTFVPFPDAPPNR----------ARP---------------HGHAG-RSELLSGTLKVTIHTETGVLIRG--------- 52  Saccharomonospo...
WP_011641892 117 PYNFIPINSKVVKARKQE------DGIiiaessdgksqypeiPSFDRYHEGLNTGYIDLNIEALTPLYIRDAYKqdeekr 190 Syntrophomonas ...
WP_011152742  27 PYHFVPLSKWVYMPDW--------AHL---------------VSHDVPFKDGLSGIIEYTVNNQTPLCVGSEQTk----- 78  Vibrio vulnificus
WP_004401184 101 PYNFIPLNECVVKAQDIP------E-------------------FNKYHKDRFSGYIDLVITTKTPIYIR---------- 145 Thermoanaerobac...
EEK33354      83 -------GRVNASTRFPHg-DRHLPAVPGSTLRGLVRNTVRMLTSGET-------GPVN---TPMLFFRAPvridPDSAD 144 Nocardiopsis da...
EDX94039      72 --kedseEESTREEELFKn-PLGQYVIPGNTIRGLTRYNASIFSFASVinepkgkKDIE---NKRFFYRTF----ASKDA 141 Clostridium the...
EDN00809      60 -------GRERNTARFFKg-ADGTYQIPGSTMRGLLRQTMQILGLGHI-------RVKEdmeDYQIFFRNV----AGRSN 120 Pseudoflavonifr...
EDT79263      71 ----dnsYGNSEVKEFYKn-AEGKKVIPGSSIRGVIANNLAILSYSNIs------ESIK---DERFLYRSF------GSG 130 Clostridium per...
EEF14907      58 -------KNPSEFCHFINekDAKEYYIPATSIKGMIRNVLEIMSFSKI-------RIDEgkhKKHLGVRDM----TDRKN 119 Campylobacter r...
EEK29567      59 -------DDAGHTLEYFYk-ENERLTIPASSLKGAIRNIVDVLTNSVI-------RNIE---DERLEERLK----PNRES 116 Leptotrichia bu...
EEP30999      53 -------FGTEETPDVPRr-ADGTPFIPGSSLKGALRSLHETITGGCL-------RVFDs--DFVPGYRDSvtvnTTRGL 115 Saccharomonospo...
WP_011641892 191 tyeakirDEKWENPEFFS--PGGTPKIPGSSLRGMVRNLLEIVSCSQL-------KYVE---DKRFYYRKV----A-VPG 253 Syntrophomonas ...
WP_011152742  79 ------qDDGSSVVKFARd-PLKNLVIPSSTMKGMLRSVLEIVGFGKF-------NQLD---DRRFSFRDI----SDARC 137 Vibrio vulnificus
WP_004401184 146 --------RDIEESEFFSi-KNGLPIIPGSSLRGMVRTLVEIVSFGKF-------GFFDk--ERRLYYRDI----AGKNS 203 Thermoanaerobac...
EEK33354     145 SALSARARrvmahqhsh-yrrrrsglrT------KQGFLFH---SPSDGRWYVvevpa--------------talsgEPG 200 Nocardiopsis da...
EDX94039     142 NIRKWYSDtlgmrlrqrgsfkytvlekV------HAGYIR-----KRGEEYVItpavkignknv--ddesrmksympIHE 208 Clostridium the...
EDN00809     121 SIGKALKD-------------------Y------YAGSVMK---IRTER----------------------------VNG 144 Pseudoflavonifr...
EDT79263     131 RNRKEYVNdlqiktkevnnekvsapftM------KAGFIYK---KSEFEYSIIpaktinnysyfriseeylrkltpkVKG 201 Clostridium per...
EEF14907     120 LVGVA----------------------E------GCGFL-----VKNDNGYMIe----------------------dCGR 144 Campylobacter r...
EEK29567     117 IVKYGIIEslp--------------kdG------EDGIIRLahrVKVKKEILS------------------------KKS 152 Leptotrichia bu...
EEP30999     116 RMAIVAEHvs----------------eD------VPPTLLV---CPDEDDPPTlhhdl--------------lvraaGGG 156 Saccharomonospo...
WP_011641892 254 RYQTLMIKgsk--------------nrDglrpatEAGWLK-----KEKGKYYIyp---------------------lEKQ 293 Syntrophomonas ...
WP_011152742 138 NYLSNIIKpy----------------pP------KAGWLKF---DVARQQWSFtpcq-----------------yakIKH 175 Vibrio vulnificus
WP_004401184 204 TLKNLYFSkn---------------kfK------SAGFLKY------------------------------------ESG 226 Thermoanaerobac...
EEK33354     201 QALKVPftvlres-------lrtwdfGIDDFPDPPRSStyvpttheqhghlQ------YRWVHAVHLPGERRVAAVApte 267 Nocardiopsis da...
EDX94039     209 WELRNLnvqgvyy-------lyndnlKKEDYKSDSTLRenr-------nsqY------RPYFIEVRYNVAEGKPKIDi-- 266 Clostridium the...
EDN00809     145 KSISNPeavcg----------gylhrKEGAYYIQPTVSpvlrvsrkhkdvaQ------FEDLTAKSFPVSYRENGQTvle 208 Pseudoflavonifr...
EDT79263     202 IEFMYTkgivqlie-----rkdefkgKKNENKKKKFLKefknkennlkgngY------KPYCVRVSFNLKGKRNITHige 270 Clostridium per...
EEF14907     145 PLTISYdkmgsef-------afarklGTAKNKYEKCIIs------------R------EVKFLTYIEEGRRNITRAQid- 198 Campylobacter r...
EEK29567     153 PTYDKKgkiykiy-------mkekikKIDKIETEKEYQell-------gkkD------GKGVITVTIWVASERP------ 206 Leptotrichia bu...
EEP30999     157 PPLRSGerlav-----------tftrGRPDAAYRDD---------------E------GEWVVFISDAKVRDAAGGRkrn 204 Saccharomonospo...
WP_011641892 294 QVYRIDakvsgdswkvvmkddedkeySQELAKFDFYPVsfip------akeKahphrgGKIRLSYALIINNSLEIGHeka 367 Syntrophomonas ...
WP_011152742 176 ADLKKAfdieikn-------dlpavkKYQRFPLSFSFQani-------sqpK------GKQKNCWVEQLGKGSTQGHv-- 233 Vibrio vulnificus
WP_004401184 227 TYKIVSs-------------------kCDRFND-----------------------------ISKVFEI----------- 247 Thermoanaerobac...
EEK33354     268 eearayldaradgaRDLGGGgvvrALVVLTGVAAGGRRNAYLFPRPADLGGRLR-VPD-----AMVELFESAEQ-V---- 336 Nocardiopsis da...
EDX94039     267 --------------NGKFKG----MLANSNYINSKRHHYLIFEED--KNSAEIV-VSK-----KLAELYTDDLK-Y---- 315 Clostridium the...
EDN00809     209 ls--------kevhPEWRQG----TMLCTGRPVGRVPNGLYLFPEEDLQAESIP-ISE-----ADVLSYQADWE-N---- 265 Pseudoflavonifr...
EDT79263     271 ------------pgKYHYEG----YLMSSEYIDGKLAHYIIPMYS--EEEAEIL-FNKengklKYIEYYKDDCL-Rt--- 327 Clostridium per...
EEF14907     199 -------------kNSSKIG----TLVFTGDIGNKKHEFVFA-----KNGNKIQ-LDK-----SVFEDFKKVYF-E---- 245 Campylobacter r...
EEK29567     207 --------------KEKYEK----ILVKTNEIL-------YRFTKKELEDIEYL-IKQ-----RSDRDKKENKD-Fy--- 251 Leptotrichia bu...
EEP30999     205 ------------yrAQLRRY----PVGAVARAVPDEVWQDFLHAVDGADDLRTAqLAK-----RNPDDVFADVT-Fqg-- 260 Saccharomonospo...
WP_011641892 368 -----------eldSNYKKG----YLVLSGSMGRNKHMHPVIHGPK--DEGRVE-IDQ-----DLIESYIADIS-Re--- 420 Syntrophomonas ...
WP_011152742 234 ---------------IFTNK----RIISTGK--PSDYEFSYFFYSPEPRKVKWQ-IDQ-----Q-VQDFFDNHNlEq--- 282 Vibrio vulnificus
WP_004401184 248 --------------QGINND----YKIWSGMIQGKKKNWIIKEPD--NLSASFE-LSD-----KDIKDYQNDEN-Rnipe 300 Thermoanaerobac...
EEK33354     337 -TGYQRAAFPDTL---GTGaadpvrepvagaaGGGLPR----RgLEPVWFDLd---ASGEVVSFGRSGGYRIAVSDDnpv 405 Nocardiopsis da...
EDX94039     316 --TQERNAASKEI---YKE-------------YYELPKe---GeVKPVFFVK-----EGDRLIFGFTPYLRIPAEGD--- 366 Clostridium the...
EDN00809     266 ---RKNVLKPKEF---WALpr--------------------eGeAKPVFFLRy-----eKHTYFGMTKMLRVGCRYP--- 311 Pseudoflavonifr...
EDT79263     328 -KKKHNPNCKSEG---DKE-------------YFLLPEkykkEnGKPLFYGSf-----nGMYCFGFSPYVRIPYLYS--- 382 Clostridium per...
EEF14907     246 ----NKDSIDGQY---WKE-------------KFNEGK----GeKIPIFYTKd---NGGRITAIGLTQLFKLAYKKT--- 295 Campylobacter r...
EEK29567     252 -YKSRKGGSEKNF---FKL-----------------------KvGDPIIMYKk--nTKDDMVHLVFSEIPRIRYKFS--- 299 Leptotrichia bu...
EEP30999     261 rVIGQRHYASRRL---HEG--------------------------QPVWVRLd---SDGEIESLRLSMIWRHPGSVS--- 305 Saccharomonospo...
WP_011641892 421 --------PKADL---FKM-------------LEKYPG----G--IPCFYLId---NKGNIKSIGHTPLFRLAYDKK--- 464 Syntrophomonas ...
WP_011152742 283 -IEYLKKNPQHEL-----------------------------G--IPVFALI----KGEKIHSIGLAKMPRVSYKNS--- 323 Vibrio vulnificus
WP_004401184 301 yYNLIKMARDKKFklpNGL-------------KIDLPN----G--APVFFVKykdkEGKDRVAFGHTGFFRLPYELT--- 358 Thermoanaerobac...
EEK33354     406 rralPAPVLgPQHGdpgRAALAGRTVd-vCRALFGdt-------dtFAGEsg-----aSKGRVSFGSALSTD--PDPD-- 468 Nocardiopsis da...
EDX94039     367 ----IYGGI-PEVH------KNYTGTd-fVDAMFGwr--------------------dFRTKLSFLDAVCES--PNPE-- 410 Clostridium the...
EDN00809     312 ----LSHGLpPRHR---EYTQQSELVldyPHAMLG-----------YAGEnq-----aYRSRVSVGDFRLEG--PGQV-- 364 Pseudoflavonifr...
EDT79263     383 ----ILDGV-SNEY------KNEKGIs-fLESIFGfan-----kdlEEGNnk-----sFKGRVSFQDVPLVK--EGKE-- 436 Clostridium per...
EEF14907     296 ----IFEA--ARQV------GDETKFd-lAETIFGtvkg----------------dkaLKGRVYFSHLKSSF--ERFE-- 342 Campylobacter r...
EEK29567     300 ----PLDLV-PKKF---QPSDSLEKLs-fSEKLFGtigdntkkdnnKEGDlv-----aLEGRVFFEDAKIIN--KNPKii 363 Leptotrichia bu...
EEP30999     306 ----AGERVdPGFH----ACREWESLc-pSCQVFGsa-------dtEGKDtpkarqnsYRGHVRFSDAVLVKraKSKK-- 367 Saccharomonospo...
WP_011641892 465 ----VKDHL-PAEH---K---SNTVId-fTEAIFGna-------------------dkFAGRVFFEDARIVN--NPGQ-- 509 Syntrophomonas ...
WP_011152742 324 ----TKELT-EVQN---KAHFSDLYFd-lAELIFGt----------LREEgl-----gLKSRVSFSDAYCTS--GSEH-- 375 Vibrio vulnificus
WP_004401184 359 ----IGDHV-PDNL---K---SNDTId-fAEAIFG--------------Kes-----kWASRVFFEDAVLEK--EQNDi- 404 Thermoanaerobac...
EEK33354     469 -YPDg-------aALRVqLLSPQRGCFANYLLQGPDAasgD--RPD-----IITWSHEGLVr----LGGYKVYLHRhraa 529 Nocardiopsis da...
EDX94039     411 -ITK---------EYEM-MLAEPKPSWYKGYLKQRKDt-------------LESYSTEGYE-----IRGRKFYW------ 455 Clostridium the...
EDN00809     365 -LPG---------IKT--VLGGPKASFYPNYVAE-----------------GKNYNQEDFR-----LRGHKLYWHK---- 406 Pseudoflavonifr...
EDT79263     437 --SN---------TCSI-VAGNPSASAYNLYLKQDIQa--S--AKD-----ILNYNSKGFE-----IRGIKEYWP----- 485 Clostridium per...
EEF14907     343 -------------APKEgVFGTPNPSYYPNYLEQR-----P--NGS-----YITLMSKEAK-----IRGYKRYPLH---- 388 Campylobacter r...
EEK29567     364 nNGK---------LVILkPFGEPHPTQVSFYLNRKD---------------YNSNAEEGIF-----IKGRKFYWHHrd-- 412 Leptotrichia bu...
EEP30999     368 -KKGgagkdsaiaTLKLaPLGTPKPGSGQFYLVNDER---V--RGNagtppLREWGSAADLprprrLRGRKHYWHTe--- 438 Saccharomonospo...
WP_011641892 510 -YQE---------L-SPqILSTPKPTTVQHYLKQEGS--------K-----LLDWNDHTD------IRGYKLYWHRkt-- 557 Syntrophomonas ...
WP_011152742 376 -MLY---------SSNLvVLNEPKPTFYPAYIEQDHDn--H--RAQ-----YNDYDHSQP------LSGHKRYIVKr--- 427 Vibrio vulnificus
WP_004401184 405 -FIE---------ETSPkILSSPKPTAFQLYLEQPKEe--NtkLEE-----LKHWDNEDAL-----IRGYKLYWHRn--- 459 Thermoanaerobac...
EEK33354     530 pggpvrydartqeELGL---TVLAPGSRPEPPRDTQRDVVPLRDGLTFRSRITFTNLTDGELGALLRALLLDnpvdggDP 606 Nocardiopsis da...
EDX94039     456 -------------MKES---LDIKGMEEQEKKERLVTRMKCYAENTKFIGKVKFENLTDEELGLLIYSLKQGd----tEG 515 Clostridium the...
EDN00809     407 --------------------EQAKADAPANGNEKVAATLYPLDKGSVFHGVIRYRNLHPDELGLLLWCIRLD------PG 460 Pseudoflavonifr...
EDT79263     486 --------------------RDFELSNITVKNKNLNINIKPVGEGAVFKGRINFKNLKKEELGLLLWSLNVD------EN 539 Clostridium per...
EEF14907     389 --------------------EDVERLSVGNDNEKMKVKFKPLSANTVFKGKIVFHNLKKVEIGALLSAITF-------HG 441 Campylobacter r...
EEK29567     413 -----------kiEKDF---KTFSNSITMNSREKYNSSLELLDYGNEFEFDVHFENLMDSELGVLIYALELE------NG 472 Leptotrichia bu...
EEP30999     439 ------------lGSSP---QTYRAKARPHHSSELTTDVAFLRKGNTFSATLVFTDLDEIQLGGLLAALQPSt----lLG 499 Saccharomonospo...
WP_011641892 558 -----------pqEGDY---GWEAIEDEINKAKSQYTKIKPVYEGATFSGRIRYENLSDIELGALLFVLDLP------TG 617 Syntrophomonas ...
WP_011152742 428 -------------PADR---QLESNVVGTNRRVAGSMELCPV--GQEFRGKIVFHNLKPVELGAILWCMQLE------QG 483 Vibrio vulnificus
WP_004401184 460 -------------SPDNstkKYSWNEGKAI-NDTQHTIIKPIKRNIKFKSRIRFENLTKEELGALLFVLDLP------EN 519 Thermoanaerobac...
EEK33354     607 adpeHAHKIGMGKSLGMGSVHLR-P--ELYLVD------RRARALSLDPGAgv---vrAGRERVRGFLDAFGAALAARRl 674 Nocardiopsis da...
EDX94039     516 -----YFNLGKGKPYGFGKCRIRiL--GLFVEN------IKEKYTSFNANY-------LKEEKSDKYVEAFRKYIIEHYr 575 Clostridium the...
EDN00809     461 ----CFHGIGMGKPYGFGRVKATiQ--RLVEWD------AEALYCPEGLAGaae-epsNPEDAVETYIRTYDRYVSAALn 527 Pseudoflavonifr...
EDT79263     540 ----AYETIGLGKPYGFGTVSLEnI--KVYKEN------LKLKYFSMVNEP-------EELINREEYIKAYKEYFKGKY- 599 Clostridium per...
EEF14907     442 rsdkFMHNIGFAKPYGYGKIDIK-L--TL----------KELKYS------------------QDEYLKEFEKQMNEFV- 489 Campylobacter r...
EEK29567     473 ----LLHKIGRGKAFGFGSCKIIiE--EFNLEN-------RNKYSNFSESI-------FESGKKEKYINKAKEKYI---- 528 Leptotrichia bu...
EEP30999     500 eekvWQH-IGGGKPFGFGACTLTiDpsGSDVWR------TGARYGVSCP---------PAKLDVEALIGQFREWMERHCp 563 Saccharomonospo...
WP_011641892 618 ----CAHKIGMGKPLGLGSIKVN-P--TLVITNysnengEAGRYMKLFANGhwhlpvyKNKE-IKVFKDLFTKHILTELk 689 Syntrophomonas ...
WP_011152742 484 ----SYHQMGHGKPMGAGVVTVS-P--TLSVVR------SNER---------------DFDGNVDKLVELFVTHMEAKHp 535 Vibrio vulnificus
WP_004401184 520 ----HYHKIGMGKPLGLGSIEIK-P--SLFIVD------RKKRYTSLFNNDtwnlgdeDKTSGKNDFKEAFEKYILRNIs 586 Thermoanaerobac...
EEK33354     675 pg-epaPGRWREVdqAVDVCLASRW 698 Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111
EDX94039     576 k----kVSNVNEIisYREFELSKKI 596 Clostridium thermocellum JW20
EDN00809     528 lkkpkkEPSLRGCpeIQDFFYLRSA 552 Pseudoflavonifractor capillosus ATCC 29799
EDT79263     600 ------SIDLDTSdpVIDLITIKTT 618 Clostridium perfringens NCTC 8239
EEF14907     490 -------PNWLNTeqLTELRKMASV 507 Campylobacter rectus RM3267
EEK29567     529 ----------NERanVEELKIILSQ 543 Leptotrichia buccalis DSM 1135
EEP30999     564 e----vVQTWPLLakALKPDTVKAD 584 Saccharomonospora viridis DSM 43017
WP_011641892 690 d----nKSDYWNTfrMRELRAMLNf 710 Syntrophomonas wolfei
WP_011152742 536 ------NGQWRLSpqLENMLAIGRM 554 Vibrio vulnificus
WP_004401184 587 dndkgnASSLWETprLKQLKIMLNW 611 Thermoanaerobacter thermohydrosulfuricus
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