Conserved Protein Domain Family
rSAM_ocin_1

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TIGR03975: rSAM_ocin_1 
ribosomal peptide maturation radical SAM protein 1
Models TIGR03793 and TIGR03798 describe bacteriocin precursor families to occur often in large paralogous families and are subject to various modifications, including by LanM family lantibiotic synthases and by cyclodehydratases. This model represents a radical SAM protein family that regularly occurs in the context of these bacteriocins, and may occur where other familiar peptide modification enzymes are absent. [Cellular processes, Toxin production and resistance]
Statistics
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PSSM-Id: 274893
Aligned: 14 rows
Threshold Bit Score: 733.747
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EAU62452      14 VCLLSMPFPVLNQPSMALGLLKPALTQAGLSVKTLYPCLWFAEE------VGLDAYVAICDSKQ-E-FLVGEWIFAEAAF 85  Stigmatella aur...
EEJ00635       2 IHLVNMPFGSITHPNLALGLMRAQLGEAGLATHVHNLNLFFAQR------VGFGSYERIALFKG-VeTQVSEWLFAAEAW 74  Haliangium ochr...
EDM75060      15 ALIIIPPFGDIEQPFLGAHILQALARQAGFELRVLYANLLFAHR------VGSARYRDIT-------HLEVEQLFKERVF 81  Plesiocystis pa...
WP_011682652   7 VALINMPFAMANRPPLGISTLKAALTLRGIRCDVHHFNLLLANW------IGPDLYQQISDRAS-HmVFAGEWLFAQQLF 79  Candidatus Soli...
WP_015925801   4 IALVVMPWNDIRTGSLALSILKSAIQGAGFGCDVFYLNLKLAKD------MDLSTYNYLNNT-----YYIGEWIFSQYLF 72  Clostridium cel...
WP_011750427   3 VLFPVVPFADIGRPAMGVGLLIAEAREAGHSAEALYLNIDMAAR------IGLVPYQRIATNFP-PnLLIGEWLFAAELF 75  Paracoccus deni...
WP_015924487   4 TALVYMPWATTTMPSLALGLLKSVLEREDIPTDVYYLNVRFTKY------MDKVMYEEISEICDaF-TFAVEWMFAQYLF 76  Clostridium cel...
WP_011654150   7 IFLVNMPMSAVERPSLALGLLKSALTRAGLRSRIVYANIWFLEY------AGLADYNLLETSPP-E-EALVDWLFAGVAF 78  Rhizobium legum...
WP_012013523   3 VVLVSMPWGSIDVPSLALGILRTAASQGGHEVQVRYANLDFFDWaarvtnLTLADYQYFSESSY-F-LGAGDWVFSG-LL 79  Salinispora tro...
WP_011541977  34 IALVAAPFNSFRRPSIQVGLLAAIARQCGWSARTHHLFLDFAVM------IGSEFYETIANDRG---VAVGDWLFSVEAF 104 Sphingopyxis al...
EAU62452      86 PG--FQPDLDTYLERVLS---ApvsrglLKKSRFSGDPHAALRAAR-Q-AAKGFIERVAARVLELQP-RIVGCTSTFTQH 157 Stigmatella aur...
EEJ00635      75 REp-FGPSEDEFLALSGE---E------LGELPHIDDPRAWLRMVRnE-VVPGFLDECLLRLAAAGPvEVVGFSCTFFQT 143 Haliangium ochr...
EDM75060      82 AA-----------RAFGA---SglnareLGVVGLGDD------AAVqA-LISAWVTDVVALALSSEA-WVLGCTTTFEQS 139 Plesiocystis pa...
WP_011682652  80 DR--KDIGDVEYLEYIGT---H---------LRVSSALIDTFVSLR-P-FIGPFLDRCERDVDWSRY-TIVGFTSMFEQN 142 Candidatus Soli...
WP_015925801  73 GKygTGELKNDFSDFSKFlilEsg---yTEAGATMRKRKTELDEIL-N-IIPQYIEECINDIPWNDY-YIVGFTCRMFGQ 146 Clostridium cel...
WP_011750427  76 GD--EISSPDEFIRDILH---Ph--------LGDDRDIYAAMRQIR-A-LLPDYLDACMAQIIARRP-DVVGFSTVFHQT 139 Paracoccus deni...
WP_015924487  77 SEekMREGKVSYSNLILP---Ilk--sdPILYMYLRTRKEIIEPLI-NnIIPKFIEDCLNDIEWGNY-KVVGFKCMIGYQ 149 Clostridium cel...
WP_011654150  79 PD--FEPNHALFLERYFRr--------nPCPHNNEAELRANFLKLR-S-LIGGFIDWTCGKILKERP-AMVGCTSTFNQH 145 Rhizobium legum...
WP_012013523  80 DD--SDRSFDSYARLLAR-------------NGTADAEIAQTGSMH-R-VVPEFIRGLAAELAATTP-DVVGFTTTFQQN 141 Salinispora tro...
WP_011541977 105 GS--AAPDPDG--RALLA---A----------FDLKDAGQLLVVRR-D-VVPRFVRLAAEEIARSNP-TVVGFTSTFQQT 164 Sphingopyxis al...
EAU62452     158 CASLAVLRKIRELAPEVVTVMGGANCEGEMGVSARRNFPWVDFVVSGEGELLFPKLCQSIlEHGRDIPAqqlphgLIGEA 237 Stigmatella aur...
EEJ00635     144 IASLALGRRIKERWPEARLVYGGACFHDEMGDELIRKVPWIDAVSTGEADDVIVPLFQAL-SEQRPPRG------LQGVL 216 Haliangium ochr...
EDM75060     140 SAAIALLDEAKRAAPERVTILGGANCEDEMARGLLSLNAAVDFIFSGESEATFPAFLSEVlGRGHRPEQ----------- 208 Plesiocystis pa...
WP_011682652 143 LATLALASRIKRRFPRICIVMGGANCESEMGEQLHKSFPFLDYVFTGQSDWSFPQFVEHV-ITNRQVDA------IRGLV 215 Candidatus Soli...
WP_015925801 147 ISSLLLSKKIKEINPEIKIIFGGANVRDIQGKQMIQDFDWIDYIIDGEGEEVFPKLALNI-DKGKCYEK------LPGVS 219 Clostridium cel...
WP_011750427 140 CACLALARRLKALPDPPVVVFGGANCEGEMGWQMIRSFPWIDHVCSGEADISFPLLLDRl-SGRREPGP------IPGVL 212 Paracoccus deni...
WP_015924487 150 VSSLLLSKKIKERYPDIKIVFGGPNVREVMGEEILKCFEWVDYVIDGEGEESLPALVKNI-AKDILYED------IPGIV 222 Clostridium cel...
WP_011654150 146 VPSLALLRRLRELAPGLITLMGGANCESVMGRTTHARFPWVDYVVSGEADTLIGGLCRDIlTHGRDIPAadlpfgVFGPA 225 Rhizobium legum...
WP_012013523 142 AASLAVARLLKQLRPQTRIVFGGANCDGPQGAALHRNFPYVDYVVRGEGEVAFPHLLDALdPLTAAPDRtkl-arISGLC 220 Salinispora tro...
WP_011541977 165 AAAIAIARRLRAMLPHARFLFGGANFERDMAAEWIAHVPEVELVLSGEADDSFPALLRAI-DAGEGMDR------VTGLS 237 Sphingopyxis al...
EAU62452     238 QLR-----L----PAGAPAPRASVTRMDTTPVPDFDDYFEE---ILSSPLRPFIF-PGLAMETSRGCWWGKKHHCTFCGL 304 Stigmatella aur...
EEJ00635     217 YRDsegavG----PLEVPHHPATSEVLDALPDPDYDEFFAQaaeVGLAAAPSWQQlVYLPFESSRGCWWGQKHHCTFCGL 292 Haliangium ochr...
EDM75060     209 ----------------RVFHGQPCLDLEALPLTSFDDFFEQ---RAALFPDEPSEtVKIPYETSRGCWWGQKHHCTFCGL 269 Plesiocystis pa...
WP_011682652 216 HRRg----G----VSVSTGRPEPVGDLNRLPVPDYDDYVTQ---LGAYRLLGKLP-VRLQFETSRGCWWGMKQHCTFCGF 283 Candidatus Soli...
WP_015925801 220 YRRg----N----EVFLSDDLPTSIAMDDIPTPDFTDYYSQ---IEEYGLNGKFE-NIVLFETSRGCWWGNKNPCTFCSS 287 Clostridium cel...
WP_011750427 213 DR------G----AAEAPLRSQGVTQMDRLPYPDFDDYFLH---LAQSPLAGQFQ-GHLVFETSRGCWWGAKHHCTFCGL 278 Paracoccus deni...
WP_015924487 223 YMKd----G----ECIRSKQSAKMAELDELPIPDYSDYYIE---FQNNDLKEFLPsINSIFEGSRGCWWGEKCQCTFCGQ 291 Clostridium cel...
WP_011654150 226 HRQa----GdpatLTGDLVHRAVVENMHALPLPDFSDYFAE---LQSSLYADRVH-PGLPMEFSRGCWWQRSSPCTFCGL 297 Rhizobium legum...
WP_012013523 221 WRDrd--gT----ERANPMSSTPLPPAHIVA-PDYTGYLER---LDASAAADWVA-PKLVVEGSRGCWWGEKHHCTFCGL 289 Salinispora tro...
WP_011541977 238 WRDa---dG----AVRQNKPARMITALDRNPTPDYGEYFDRaeyLGLVQIGLRND-VRIPFESARGCWWGEHSHCVFCGL 309 Sphingopyxis al...
EAU62452     305 NGGNMDFRSKSADRVISELSELSTKY-GIRKFNIVDNIMDLAYIQDLAPRITSDTP--YTLFFETKVNLKRAQLERIAAA 381 Stigmatella aur...
EEJ00635     293 NADGMGYRAKTADKVLRTLESFARRYpSVQTIRATDNILAQSYFRELLPVLAEKPFgdLRFFYEVKVNMTRAQVKALADA 372 Haliangium ochr...
EDM75060     270 NGGGMGYREKSADKVFRDLNALHQRY-AYDEVMMVDNIMPHGYFKSFVPRAAEELPpgTRIFYEQKANITLRKAMALKRA 348 Plesiocystis pa...
WP_011682652 284 NAETMQFAAKSPGRVVDELEYLASRY-NTTEFDAVDNILDYRAFATVLPRLAERKPa-FSLFYEIKSNLRRDQVRLLAQA 361 Candidatus Soli...
WP_015925801 288 TLGRYEFKSKSPDKIINELKYLSHKY-NSNSFFFTDSILDVNYYKTLFPKILEMEQs-FNMFFEVKANTSKNQLELLRQI 365 Clostridium cel...
WP_011750427 279 NGDTMAFRSKSPDRAFDEITWLAQRH-KASRVGCVDNILDMKYVTTLFPRLAEAGYh-LDLFYEVKSNLRLDQLRQMRAG 356 Paracoccus deni...
WP_015924487 292 CNGYLKFRSKSTDRVLNEVLDLIEKY-DNKNFWATDCILSLDYFDTLIPELIKRKLd-LNVFFEVKPTLTREQISMLYAA 369 Clostridium cel...
WP_011654150 298 NGALMTYRQKPAAQASEEMIEMSKRY-GTSRIEAVDNILANDYVEKALPRLVALPEk-LAIFFEVKANLKRDEVEKLAAG 375 Rhizobium legum...
WP_012013523 290 NGSFMQFRSKSPARFLDELLDLARRH-QLLDFIVVDNILDMAYFDSVLRWLAESEYd-LRLHFEVKANLRRHHFQQLSDA 367 Salinispora tro...
WP_011541977 310 NALTMKFRSKSPERVWDELAELAERY-RSYHFEAVDNIVDRGYREALLPRLAASDAt-YDIFYEVKSNLKPDEIRDMADA 387 Sphingopyxis al...
EAU62452     382 GIRRLQPGVESMHDEILRLVDKGTTALQNIQLLKWAREIGIFITWNFLWDVPGEQDAWYGEMAAWLPWVTHLQPP--GVD 459 Stigmatella aur...
EEJ00635     373 GICYIQPGIESLSANLIQQMRKGMSALQNVFFMRCCREYGVMPVWNNLIRVPGERAEDYAQMAAWLPKLVHLWPPs-GGS 451 Haliangium ochr...
EDM75060     349 GIDHIQPGIESLSTALLRRMDKGIKASQNIALMRYARAVGLQLVWNLLVRFPGDREEDYEGMIELIPLLAHLRPSa-GVH 427 Plesiocystis pa...
WP_011682652 362 GVRYIQPGIESLNTQVLGVMKKGLTALQNIQVLKWCREFAIVPSWNLIYGFPDELPEAYAEMASVMRWLHHLPAPr-GSG 440 Candidatus Soli...
WP_015925801 366 GVYSVQPGIENLSTELLKLMNKGVTSLQNIQLLKFCAELGIDVRWNILYKIPGEKGSSYNQMLELIPLITHLQPPp-GLT 444 Clostridium cel...
WP_011750427 357 GVTQIQPGIESFSDRVLKLMDKGCTGFQNIQLMRWCRELGIEVAWNVLSGFPGEEPEEYAAMARLIPQLTHLDPPc-SCG 435 Paracoccus deni...
WP_015924487 370 GIRKLQAGIENINTRLLKLMHKGVSAIQNIQFLKLCTEQGISVFWIMLYRIPGEEKQCYDEVINLIPSISHLEPPapGRL 449 Clostridium cel...
WP_011654150 376 GVRCIQPGIESLDSRALKLMGKGTTAAQNVQLLKWCRQFGMRVIWSILWGFPRESDAWYAQMGRLLPLLH--HLQp-GHA 452 Rhizobium legum...
WP_012013523 368 GAVQVQPGVENLSSNVLRLMDKGVTGCQNVRALRDAQSAGVTASWNYLYGFPGETAQDYTSVLAQLPALHHLEPPi-SST 446 Salinispora tro...
WP_011541977 388 GIRTIQPGIESLSTPVLKLMRKGVRGLDNVNLLRWSAHYGVAVSWNVLWGFPGEKAEFYAEQVDLFQHLHHLQPPs-AGL 466 Sphingopyxis al...
EAU62452     460 -RIQFHRFSPYHQRPASFgL-TLEPYPLYSHVYPLTPEELGGLAYYFHDpr-----rRSAKEELERRPHLRQTMReIAQW 532 Stigmatella aur...
EEJ00635     452 pKIELHRFSPYFAEGERW-LsKRRPASWYAGLFPGERFDLDRVAYYFDG--------DWKNTLDGDAPYQALVDG-MFDW 521 Haliangium ochr...
EDM75060     428 -QVSFDRFSPYFSKAREHgLrNLRPWPAYAEVYP-EHADIEALAYHFDA--------DVVSAVDRKPALVTELARlCTEW 497 Plesiocystis pa...
WP_011682652 441 -KIRLDRFSPHWSNPEAFgLrNVRPLQVYQYLYPLRDEERRRIAYFFEY--------DY-AEPRDVPSYTEAADRaINEW 510 Candidatus Soli...
WP_015925801 445 -TVDLERHSPYFCNPEKYgIsEVRPSSFYKYIYPADRINLENIVFTFDY--------KCDSFSEWDEEYHTSLIRlVNFW 515 Clostridium cel...
WP_011750427 436 -MLRLDRFSPFHSRAEALgIrRMRPARAYFYVYPLGRRELSRLAYFFDF--------DHEPGCEPAV-YVSPVQAaVADW 505 Paracoccus deni...
WP_015924487 450 fPINLDRFSPYFNDPEKYgIkDIKPKAMFNLIYPDPKINLNNISYEFDF--------TFNKSEETVKLYINNLNTaVTKW 521 Clostridium cel...
WP_011654150 453 vRLRYQRFSLYHRAADQYgL-TLSPAASYRYVYPLSERDLADQVYYFEDsedddagrDFRALDAKRRPGVQAVIQgMDAW 531 Rhizobium legum...
WP_012013523 447 -RIAIERYSPYFDRPE-LgFaSLRPAPQYAEIYRLPETELADLAYVFTS-----------PPKGIDRTLAAELDAaLATW 513 Salinispora tro...
WP_011541977 467 -RVWLERYSPLFKDEASFpKiRRKPERSLDFIVP-TRIDKEAIAYFFEY--------ELENTLSDSD--FDGMAEaIGVW 534 Sphingopyxis al...
EAU62452     533 NKLWNRggfegTWeKPVLRM-FDEGERLRLMDTRPC------Ap------ASEQILTGLAKQVYQ-QCDAIQTLKSLLEG 598 Stigmatella aur...
EEJ00635     522 IDIWRLa----DE-LPVLLMhEREDGGLLIEDTRGG------S-------RVTHEVDALAAQVYR-AIDAPAKPKQILRK 582 Haliangium ochr...
EDM75060     498 ESRWQVr----ES-VPRLQItPLFGDQYVLVDTRGL------Pg-----vPSERMLTHDEASLL--LVG----------- 548 Plesiocystis pa...
WP_011682652 511 RAA--------ET-AGAALIvDDAGESATIKDTRMP------Gv------TREFRLDGWKAHAYR-MLDQARPRGSLVTD 568 Candidatus Soli...
WP_015925801 516 KGIN-------TD-NRIICKyNTCNEGIEIVDSRPL------DfnesdnvERRYIYTDLNSEVYI-LCDSICSFEQILER 580 Clostridium cel...
WP_011750427 506 RNASLAp----EG-RPMLDAeFDAGG-VTIRDSRAV------At------ARRHRLTGLAARLYA-LCDSAASIAGLAHA 566 Paracoccus deni...
WP_015924487 522 QKAY-------EN-KKYYCWyRVENDAVEIEDNRPIvagqesDi------HRKYTLKGLEMQVFL-LCNDICSLEDIYRE 586 Clostridium cel...
WP_011654150 532 GDAWCG-----LT-PPMLSM-RDTGDEIIVEDTREV------Aa------EREQGVKGLAREILL-AADQGMPEARLGGQ 591 Rhizobium legum...
WP_012013523 514 QARYPI-----S----RLTYqELA-DRIVLVSRRAS------Fd-----wTVLELTTPAEIELFR-LLGQPRTVATLVAK 571 Salinispora tro...
WP_011541977 535 KEAWMR-----DW-RPQLRy-FSSPGVVTVEDSRHA------Pe------PRLTRLTGRDASIFQaLLEKPLSAGRVAEM 595 Sphingopyxis al...
EAU62452     599 LAKHgve-gaSPGDVQAILDDLVKRKLLLRQGERFIALAL 637 Stigmatella aurantiaca DW4/3-1
EEJ00635     583 LDAAgvsealGPKRTLALLEGFVASELALSDEGAYVALAT 622 Haliangium ochraceum DSM 14365
EDM75060     549 ----------GAREDRAQAAWAVDNKWLVELDGRLVPLAI 578 Plesiocystis pacifica SIR-1
WP_011682652 569 LQESrhg-apSEEIIDSFLACCVESGLMLQEQDRYLALAV 607 Candidatus Solibacter usitatus
WP_015925801 581 FSSRl-----NETGLREILNEFVSKKLMVCEEGRFLSLAI 615 Clostridium cellulolyticum
WP_011750427 567 TAE-------PEARIEAELADLDRARLIARQGERALALAV 599 Paracoccus denitrificans
WP_015924487 587 VNKNrek-eiGKDKLQEIIGWLKDNKLLLEETGRYTNMAL 625 Clostridium cellulolyticum
WP_011654150 592 LKGA------SLMEIEEATADLIARKLIVRLDARLVGLPL 625 Rhizobium leguminosarum
WP_012013523 572 VPG-------GAAVVEPLLSRWAALGLLFHDGGYQVHLAV 604 Salinispora tropica
WP_011541977 596 IDE-------PLQRVERSLRLLSHEGLIASEGGLHLSLPL 628 Sphingopyxis alaskensis
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