Conserved Protein Domain Family
monoFe_hyd_HmdC

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TIGR03958: monoFe_hyd_HmdC 
5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC
Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homolog of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA. [Protein fate, Protein modification and repair, Energy metabolism, Methanogenesis]
Statistics
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PSSM-Id: 274881
Aligned: 7 rows
Threshold Bit Score: 843.258
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011170069   1 MKELIKNSLNDLDSAMELRELvinkinnqkltE-------SDIIEIVDTVDDLSFEDTQKLGSIFRRFPLGCDLLEIGVG 73  Methanococcus m...
WP_011447298   1 MHDLIRKAINDPDAAWELSKI-----------E-------KGPRDVIDAVTSLNREEAIKLGNTFKRFPLGCDLTEILVG 62  Methanospirillu...
WP_011834109   1 MKSLLQDAANDPYRAWELVKYa------------------KNPEQIIEGLTALNREETMHLGMNFKKFPLGCDLTEVFVG 62  Methanocorpuscu...
WP_011973738   1 MHDIIKSAVNDLDACLELRGLitnkltnnkltE-------GDIISVVDAVGELPIEDIQKIGSNLRKFPLGCDLVEIGIG 73  Methanococcus a...
WP_010870294   1 MRELIKEAVNSLDSALELRKLii-------kkLnekklkeSDIIEIVDAVDDLSLEEIQKLGSNLRTFPMGCDLVEIAVG 73  Methanocaldococ...
WP_010876761   1 MHELIREAVDNPGTAWEIIKM-----------D-------RDVTEVVDAVSDLSREDKIKLGATFKRFPLGCDLTELIVG 62  Methanothermoba...
WP_011018389   1 MLDLLHEACESLDAALELKRLay-------egK-------LSVDEVVTDLGELTDRELEALGDNLRTFPMGCDLIELAVG 66  Methanopyrus ka...
WP_011170069  74 PCSSSLTLPQFIENCVFTDHMGFPIHLCGYALADIAEKEGLTPIEVMNEVYNNVEVPLDLDHFGRFGPMRFPKEISHCMG 153 Methanococcus m...
WP_011447298  63 TCASDLEKTDILGNCMLADSIGASIHVCAYAFADIAEAHGMKGIDLLKEVREITEVPLDLDHFGRYGPMRLPPQIIGCNG 142 Methanospirillu...
WP_011834109  63 TCASDLALQDIYGNCLLSDTIGASIHVCAYAFSDIAEANGMRGIDLMRKIRETTEVPLDLDHFGMYGPMRFPETIVGCPG 142 Methanocorpuscu...
WP_011973738  74 PCSSSLTMPQLVENSMLSDYMGFPIHICAYALGDIAERESITPLEVFKTISESVEVPIDLDHFGKYGAMRFPKEITHCGG 153 Methanococcus a...
WP_010870294  74 PCSSSLTLIQFIENCILTDYMGFPIHICSYAVADIAEKEGLKPIEVLKMVLENVDVPIDIDHFGMYGPMRFPKEITHCYG 153 Methanocaldococ...
WP_010876761  63 TCASDLEKIDLMGNCMLSDTIGATIHVCAYAFADIAESYGMRPVELMREVRETTEVPLDLDHFGRYGPMRFPRSITGCGG 142 Methanothermoba...
WP_011018389  67 PCASDYSPDVLLANAILADRMGLPLHVCAYAVADVAENYGMRPIELFRRLVRNVRVPVDVDHIGAHGPMRFPRDITACEG 146 Methanopyrus ka...
WP_011170069 154 DCYYNGPPYKGCPRDRIHKRLITKEREYSNEFGEWIKKSATVCVNVVEEQG--GGDHGADISEMEDVAKAAQKFGRGVEG 231 Methanococcus m...
WP_011447298 143 QCYNEGPPFSGCPRDRIHSRLLDVEQDALSDRDEWVKISSSVAVNLTCVQG--ADGHAAPLDEAQEVADLARKYGKGIEA 220 Methanospirillu...
WP_011834109 143 QCYNQGPPFDGCPRGRIHARLIEKEKEALEDKEEWIKLSSSVAVNLTSIQG--GEEHAASLDEAEDIVKLARKYNKGIEA 220 Methanocorpuscu...
WP_011973738 154 DCYRMGAPSEGCPRGRIHKRLIDKEKEYSYEFNDWIKLSSTVCINVVEEQG--GEEHGAPLEEMKIVANEAHKHGKGLEG 231 Methanococcus a...
WP_010870294 154 DCYFKGPPFKGCPRNRIHKRLIEKEKEHADEFEDWIKLASTLCINVVEEQG--GEEHAAPLEEMKIVAETAKKYGKGLEG 231 Methanocaldococ...
WP_010876761 143 QCYLEGPPFEGCPRERIHARLLDREKEGLSDREEWVELSSSVAVNLTPVQG--AETHAAPLEEAEEVLELARKHGKGVEA 220 Methanothermoba...
WP_011018389 147 TCYLEGPPFKECPRGRIHRRLIDKERQQGEDLEEWAELAASICVNVTGEGGqdAEAHAAPLDEMKRVAETARHSGAGVGA 226 Methanopyrus ka...
WP_011170069 232 IFHIGDGYEDLITGLKACN-DLDVDVLVIEGGPFNRSKDRLKDFAKSVAVSRILVKGGVVATNGAYEDECRVGLRSGLNV 310 Methanococcus m...
WP_011447298 221 IMFVGDGYDDLIKGFTAAL-DMGVDVFVLEGGPFNCSTDRLTAFARAVAIARILVPGKIVATNGAYEDECRIGLRAGLNA 299 Methanospirillu...
WP_011834109 221 IMFVGDGYEDLIAGFDAGL-KMGVDVFVIEGGPFNRAKDRLDAFSRAVTAARILAPGKVVATNGAYEDECRVGLRSGLNA 299 Methanocorpuscu...
WP_011973738 232 IFHIGDGYDDLITGLKSCV-DLGVDAFVVEGAPFNRAKDRLKTFAKAIAVSRILVKGGVVATNGAYEDECRIGLRSGLNM 310 Methanococcus a...
WP_010870294 232 IFHIGDGYDDLITGIKACI-DLDVDVFVVEGAPFNRAKNRLKAFAKAIAVSRILVKGGVVATNGAYEDECRVGLRSGLNT 310 Methanocaldococ...
WP_010876761 221 IMFVGDGYDDLISGFEAGL-EMGVDVFVLEGGPFNLAGDRLDAFAGAVAAARILTPGKIVATNGAYEDECRIGLRAGLNA 299 Methanothermoba...
WP_011018389 227 ILHVADGEDEFADGLKAAVeEVKADYLAVEGGPFNRAEDRLSAFRRAVVACRVFAPGKVVLTNGAYEDELVVGLRAGLNG 306 Methanopyrus ka...
WP_011170069 311 ILSGFSGNHHGYMCGYNIKEARRNNFGLPRVLKIMKEEAE--KI--NICIANRELLKVLARSSRFLnhnENHLVYPSMIG 386 Methanococcus m...
WP_011447298 300 IITGFPKNHHGYMCGYSPGKIKRGYFGLPRILQIIKEEVRd-RW--THTPIQKGELEALARAVKVV---GIDTVYPQKIR 373 Methanospirillu...
WP_011834109 300 VISGFPKNHHGYMCGYSPGTAKRGNFGLPRVMQIIHDEAAt-QW--THAPIQKGELEALARAVKVV---GPQNAYPKVIG 373 Methanocorpuscu...
WP_011973738 311 ILSGFSGNHHGYMCGYSPDTAKRGNFGAPRVLRIIKEEIEynKL--DTCLLTKPVLRALTKSAKFLnygGNSLIYPNKIG 388 Methanococcus a...
WP_010870294 311 ILTGFPLNHHGYMCGYSPKTAKRGNFGLRRVMRIIKEEIRagNV--NATFIDKDMVKAIALGNRFL----KGNIYPYSIG 384 Methanocaldococ...
WP_010876761 300 IITGFPKNHHGYMCGYTPGTARRGKFGLPRVMKIMREEVEs-GL--TPVPIQKAQLEALAAAVKVS---GTENVYPRTLG 373 Methanothermoba...
WP_011018389 307 ALSGFPKNHHGYMVGYEPGTARRGKFGLPKVLAIMRKTLGs-RYgnTKVPAGWEELEGITRAALFL---GSNLLYPRDVA 382 Methanopyrus ka...
WP_011170069 387 DYFIGDAHWVSITNSKMYNAPYFG-KTLDSL----EEELNCDKVGVLGGRYISWGIADALK---PEELYVSDVDPWVEHA 458 Methanococcus m...
WP_011447298 374 YTYVGDAHWACLPHTPVFSRTHVL-KTVQDIvsmaLDGQIGDTVALLGGRFVSWAIAKKLDg-vVDSIIISDVDPWIEHV 451 Methanospirillu...
WP_011834109 374 ATTLGDAHWACLSHTPLYRRVTVN-RTINDItqmaENGEFNETVALLGGRFVSWAVAKALSg-kVDRILISDADPWVENI 451 Methanocorpuscu...
WP_011973738 389 DFFTGDAHWVAVNNSNLANNLHT--KTIDDI----E---KVDKIGALGGRYVAWGLIDALK---PEEVYISDANKWVEYA 456 Methanococcus a...
WP_010870294 385 GFYLGDAHWAAIKESNLCKKLKIN-KTIDDI--------SAEKVGLIGGRYISWAIAEK-----AEEVYISDTDSWVEKA 450 Methanocaldococ...
WP_010876761 374 YTYVGDAHWACLPSTPLYERVEVK-RDVNALvkmaEDGDIHGRVAIFGARFVSWVIADKLDg-lVDEFVIVDRDPWVEQV 451 Methanothermoba...
WP_011018389 383 GIPIGDVHWVAALRSNAARELSDEvRSVEEV----ASEVDADTVALLGGRFPAWGLALTLDelgVSEVLISDPDAWVERA 458 Methanopyrus ka...
WP_011170069 459 TVKILNDN-GINAYACNGNDKKALESAEKSVITTMIPEIVLRIKNKF--D--AVSLL 510 Methanococcus maripaludis
WP_011447298 452 TIDNLRSElHTEISPAKSSDTYAHEHADTSIICSTMPELVRKMSWKCg-D--AITLI 505 Methanospirillum hungatei
WP_011834109 452 TIENLRSVvDTEICSGNTDDAGSAASADSTIICSTVPEIAGKIQHKIgrN--AITFI 506 Methanocorpusculum labreanum
WP_011973738 457 TIKILNDA-GINAYGTDGNDKKVIEQADKSFITSFIPEINLKIKNRYnkD--VESLI 510 Methanococcus aeolicus
WP_010870294 451 TIKILNEA-GINAYPCNGDDKKVLE-ADKAYITTFIPNIALKILNKLr-DskVELLI 504 Methanocaldococcus jannaschii
WP_010876761 452 TVDNLRSElRTDVHPGNSDDEGAYSSADSSIVSTTIPQISAKISGKFr-D--TVTLV 505 Methanothermobacter thermautotrophicus
WP_011018389 459 TVRLLDEElDATVHAMAGDDRKAVKEADAAFVTAVMPGIAERLAERTg----AMTVC 511 Methanopyrus kandleri
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