Conserved Protein Domain Family
rSAM_HmdB

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TIGR03957: rSAM_HmdB 
5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB
Members of this archaeal protein family are HmdB, a partially characterized radical SAM protein with an unusual CX5CX2C motif. Its gene flanks the H2-forming methylene-H4-methanopterin dehydrogenase gene hmdA, found in hydrogenotrophic methanogens. HmdB appears to act in in biosynthesis of the novel cofactor of HmdA. [Protein fate, Protein modification and repair, Energy metabolism, Methanogenesis]
Statistics
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PSSM-Id: 188472
Aligned: 4 rows
Threshold Bit Score: 589.478
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011018388  16 LADTEAIVRLLSAKSVRVHDLFRAALSEKLHHRGElVKLTSTIHVTNECRIRPRCAYCGFAAGASPEGYFEGFTRSYEEI 95  Methanopyrus ka...
WP_010876767  15 LQDGEVIQLFRIRESGDLASLMKTAFNIMRENRGS-VKLTSTVHITNMCQVRPRCGYCGFAAGTSKNGYYNSFFKTDDEI 93  Methanothermoba...
WP_011834102  15 FAPDDYLNIFSSSSYAELEPLINVIYDRQKSGHSP-IKLTSTIHLTNQCHVTPKCTYCGFAAGTSENGYYTPFHKTDSEI 93  Methanocorpuscu...
WP_010870291  45 IDEDEALKLFKIDNWRDYLKLFDIASRVRDYFKKK-IEITSTIHITNICHVNPKCLYCGFAAGTSKEGYYEPFRLTDEEI 123 Methanocaldococ...
WP_011018388  96 AEAAKAIEESGIPRVSCSGAYrGDGGKLAVTAARAVKENTDLELLINFGHDLSEETIAELARLDVETICCNLETTNRELF 175 Methanopyrus ka...
WP_010876767  94 LEAALIIEESGIPRVSCSGAH-GFNGEHAVKAARIVKENTSLELLINVGSDLNRSATEKLADYGTDTVCCNLETTNRELF 172 Methanothermoba...
WP_011834102  94 ETIAKAIELSGIPRVSCSGAH-GYGGEQAVSAARIVKNTTSLELLINVGADLTRESLEKISRYNTDTICCNLETVNEQLF 172 Methanocorpuscu...
WP_010870291 124 KKSAIAIEESGIKRVSCSSAH-GYQGKEVIRALKIVKKYTNLEVLVNAGADLTEESIKELKKYGIDTICCNLETINENLF 202 Methanocaldococ...
WP_011018388 176 ERLKPGDSFEERVRVCETVCRYGIDLSSGLLVGIGEDYRDRAEHLKFLARFETLAEIPIMGFNPYPGTLMEHVPRCPLLE 255 Methanopyrus ka...
WP_010876767 173 SSVKPGERIEDRIRVCEMVCAAGIELSSGLLIGLGESYADRLEHLKFLSKFETLGEIPIMGFNPYPGTPMEEHPPCPLSE 252 Methanothermoba...
WP_011834102 173 HKLKPGENLANRIHVCQMTDDIGLELSSGLLIGVGESHQDRLNHLQFLKRYKNLGEIPIMGFNPYPGTPMANHPPCSLLE 252 Methanocorpuscu...
WP_010870291 203 KKVKPGEELEDRIRVCKLVNKYDIELSTGLLIGIGESYEDRVEHLFYLKNELNVGEIPIMGFNPYKGTPMENHPKCSALE 282 Methanocaldococ...
WP_011018388 256 QAKVMAVARLMYPDLMITAPTPTVGPEEVEVALMAGADNLATVIPDNHPHEVKGVGNPRTGNLDRVVELIEGFGLKPEL 334 Methanopyrus kan...
WP_010876767 253 QMKTIAITRILYPDIRITVPTPTIGPENVRFSLMAGADNLATVIPDGYPHDVKGVGSPRYGNLRDVLKVVKEMGLRAQL 331 Methanothermobac...
WP_011834102 253 QIKTILVVRLMYPDIRITVPTPTIGPKNVSYSLKAGATNVATVIPENYPVDVKGVGSPVCGNLSDVLTTIYNLGLSPQL 331 Methanocorpuscul...
WP_010870291 283 QAKTIAITRLIFPNIRITSPTPTIGAELVQFALFGGASNVATVIPKNHPMNVKGVGNPKTGNLEEVVKMIMDLGLKPKL 361 Methanocaldococc...
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