3FIN,1P85


Conserved Protein Domain Family
rplD_bact

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TIGR03953: rplD_bact 
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50S ribosomal protein L4, bacterial/organelle
Members of this protein family are ribosomal protein L4. This model recognizes bacterial and most organellar forms, but excludes homologs from the eukaryotic cytoplasm and from archaea. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Statistics
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PSSM-Id: 274877
Aligned: 68 rows
Threshold Bit Score: 203.882
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3FIN_F        22 ADLPAEI------NPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGGVVFGPKPR 95  Thermus thermop...
WP_002669996  16 INLDDKVfgl-pvNDDVIYYAINNELANKRVGTACTKGRAEVHGSNSKPYSQKGTGRARRGDKKSPLLVGGGTIFGPKPR 94  Treponema denti...
WP_011282156  15 IEVLDKIfsa-kiNKRLVDNVLYKTNANYKGRHAKTKQQNEITGSTSKIYAQKGTGGARHASRKAPIFVGGGVAHGPKGE 93  Candidatus Pela...
WP_011669432  16 IELPSALfes-klSVASIYEAIKAENANLRSGNHATKTRSEVRGGGKKPWSQKGTGHARQGSTRAPHWVGGGTVHGPQKR 94  Leptospira borg...
WP_006688823  17 LEVTSDLfve-vpHKQAMFDSVLAENAAERQGTHSTLTKGEVRGGGKKPWRQKHTGKARTGSTRNPHWTGGGVVFGPKPN 95  Ureaplasma parvum
WP_010874523  18 VKLSPGLiak-elKQQPVFDAVLVEQASWRQGTHSILTKGEVRGGGKKPYKQKHTGKARQGSTRNPHFVGGGIVFGPKPN 96  Mycoplasma pneu...
WP_011113281  17 IELNQKLlvs-evHKQAIFDAILAENLSQIQGTHSTLKKGEVSGGGKKPYQQKHTGRARQGSIRNPHYVGGGIAFGPKPN 95  Mycoplasma gall...
WP_009885836  17 IQPANHLllk-kaVIQPVFDAILLEQAACRQGTHSTLTKGEVSGGGKKPYKQKHTGKARQGSIRNPHYVGGGVVFGPKPN 95  Mycoplasma geni...
WP_012498255  69 STLPKSVfglekpYNQAVFDTILSERGAKRLATHKTKTRAEVSGTGKKPWAQKGTGNARAGSMRSPIFVGGGRVFGPTPE 148 Mycoplasma arth...
WP_002557070  16 INLDDRVfni-eiSHGSIYNAIKNELSNLRVGTSSTKTRSEVRGSSKKPWKQKGTGRARVGTKRNPVWIGGGIALGPKPR 94  Borrelia burgdo...
3FIN_F        96 -D-YSYTLPKKVRKKGLAMAVADRAREGK-LLLVEA--FAGVNGKTKEFLAWAKEAGLdg-seSVLLVTG---NELVRRA 166 Thermus thermop...
WP_002669996  95 -D-FSYSMPKKAKRLAMKSILSLKAQNDR-LVVVED--FTVESGKTRDLVKILDNFAKg---eRAVIILKd-dDSLVKRA 165 Treponema denti...
WP_011282156  94 lAyKKRKLNKSEKKLSIASLITEKNKLNN-LIIFSD--FGNEIKKTKEMHSIIKKFEIt----NSLIILDkssKEKIEKS 166 Candidatus Pela...
WP_011669432  95 -D-YSYKVSSKLKHKAVLSILNKKAQASA-VKVIED--LDPKEYSTKSFDSIFKNMNLrntgvIGFLVQGe--SDFVKKS 167 Leptospira borg...
WP_006688823  96 rN-YNLKVNAKVRLLAFKSALTIKLNEGKmLGLVAN--SDLETPSTKKMVNFINNANLen--qKVLLVIVd-nFSNIKKS 169 Ureaplasma parvum
WP_010874523  97 rN-YSLKLNKKAHTAALHTVWSEKLASDN-THLVDQnlFNKTEGKTKVMMQFLKSAKLld--kNVLFVVNt-lNTNLEQS 171 Mycoplasma pneu...
WP_011113281  96 rN-YKIKVNKKVSSLAFKSAITSKVNNNEfLGLVDS--IKQDKPSTKAIAKLLKELKVn---kKVLIVAFe-kNENLEKS 168 Mycoplasma gall...
WP_009885836  96 rN-YKLKLNKKAYQLALTSAFAQKLNNNQ-VIVAEAklFEQTNAKTKKMLTFLKNAKLte--qKLLFVIDt-iSKPLLLS 170 Mycoplasma geni...
WP_012498255 149 rN-YHLKVNKKVRKNALFTALSALAASQA-VLVKDI--M-MTKPSTRDMLVELTKEKLna-lnYVLIVSN---DENVYLS 219 Mycoplasma arth...
WP_002557070  95 -D-YSYRLPKKVKKLAFKSVLSLRAADENsFKVIEN--FNVESGKTKDLALIIKNFASfn--gKVVILLGn-dDQMIKRA 167 Borrelia burgdo...
3FIN_F       167 ARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQN 204 Thermus thermophilus
WP_002669996 166 GRNIPHLSFLAYNRLRAHDLFYGRKVIMLESAAKNLSE 203 Treponema denticola
WP_011282156 167 VRNIPNVKVTDINHFSAFDIIKFKKVVFTESSIKELEK 204 Candidatus Pelagibacter ubique
WP_011669432 168 VRNIPTVKYINSKRISCRDILYNRNLVITEAALNEMLT 205 Leptospira borgpetersenii
WP_006688823 170 TNNLQKVTTKLWYQVSVRDLMHANVVVVAEEAFTNYAR 207 Ureaplasma parvum
WP_010874523 172 TSNIKNVQVKHLDKVSVRDLMLANALLVEKEVLKALEG 209 Mycoplasma pneumoniae
WP_011113281 169 SANLPNVSYKLWNQVSVKDLIDANCVLAQKSAINNWVE 206 Mycoplasma gallisepticum
WP_009885836 171 TNNLKQIVVKQFNKVSVRDLLLAKTIIIEKAAFTKLEE 208 Mycoplasma genitalium
WP_012498255 220 ARNLPNVEVTRVTSLSVESLVRADALVISKESIEWLER 257 Mycoplasma arthritidis
WP_002557070 168 GKNIRDLKILSFDKLRVVDLFYAKNLIALESAVNKLNE 205 Borrelia burgdorferi group
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