Conserved Protein Domain Family
tRNA_deam_assoc

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TIGR03941: tRNA_deam_assoc 
putative tRNA adenosine deaminase-associated protein
This model describes a protein family about 200 amino acids in length with only five invariant residues, including an Arg, a Ser-Asp pair, and two Gly residues. Members always are found exclusively in Actinobacteria, and always adjacent to homologs of TadA, a tRNA-specific adenosine deaminase from Escherichia coli. Homology, phyletic pattern, and gene neighborhood together suggest a housekeeping function in tRNA metabolism. [Unknown function, General]
Statistics
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PSSM-Id: 274869
Aligned: 35 rows
Threshold Bit Score: 78.4111
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_05914442    2 SYFTEILAETSDGFRALDVDVRDASDLDSLVEMMQ---Aa--gSEDGE-----SVAVIEHEDEWFGLVRVCT-Dn-E-I- 67  Brevibacterium ...
EFC83657       2 STKGIAIAQHGERWTAHDLHIADMEDLDSLVDAMH---D----LSSGT-----VIAFVEEDDEYLAIVRITA-RdpD-P- 66  Frankia sp. EUN1f
ZP_04486547    2 SYFAVAATRADDVWEAAEIDLDSVGDLDDVIDVVR---Dv--dPEAQI-----SLLFVEADDEYLVILRLDN-Gd-D-A- 67  Stackebrandtia ...
ZP_04334726    2 STFAAVFAPNGRTWRGTEVELGDVDVIDDVTELML---DfatdRGSEV-----SILLVEADDEWFAIVRADD-DggE-P- 70  Nocardiopsis da...
WP_012855236   8 TDFAVVVYREDDCWEAEVLPVALTRDLHGLIHALR---Qq---PSIGG-----TIGLVAVGDDFFVAIRVLG-D--E-V- 71  Thermomonospora...
WP_012895665   7 LDFAIVVYREDDIWEAETLPVALTSDLDGLIHALR---Qq---PSMNG-----TIGLVAVGDEFFVALRVFG-E--R-V- 70  Streptosporangi...
WP_011720854  23 SQLAALVAKDGHRWHGAEIDLGELRDIDDLADAMRl--Aa---RGDEP-----VFVFVEEDDEWFAVVRIDG-G--EeP- 88  Acidothermus ce...
WP_012895664   9 SVFSAAFVRTADGWNGAEVDLSAAEIADDLGDAVQehlGl---SGDEL-----ALLCVEVEDEWFAIVRYQG-Dl-E-P- 76  Streptosporangi...
WP_011290473   2 AVFAAVFSHAADGWTGTEVDLAEYEGIDDLADLMR---Dt---AAAEStaetsVVVLAEADDEWFGVARLDDtG--E-P- 71  Thermobifida fusca
WP_011434747   2 TTKAIAIARVHGHWSVHDLDPADVDDLDALTDMMR---Dl----GDGP-----VVAFLEEDDEYLAVVRVCP-D--D-Pd 65  Frankia
ZP_05914442   68 -RVFLSDLRAVELSPFADIFAD-FLDsqPDAyeaepeeefgleeePAGDDeDE-----DEE-VEmlEFDadaewGGDAEI 139 Brevibacterium ...
EFC83657      67 -KVFLSDRRVLLTSDHAERLFA-DAL--PSMag-----------fDSDDD-SD-----EDT-PVgqASP-----VGDLDL 119 Frankia sp. EUN1f
ZP_04486547   68 -RVFGSDAPFAEESRLGAVLLS-DID--ADVap-----------vPNGDDdLE-----TPVmSEldAQP-----VGEADL 122 Stackebrandtia ...
ZP_04334726   71 -RVYLSDARVVHDHPLASVLSE-AGG--LGA--------------PPP---SE-----SAG-ARpdPRP-----DGDGGL 118 Nocardiopsis da...
WP_012855236  72 -MLFLSDVTASVDWPLARQVLE-YLD--IPV--------------PEDEE-LD-----Q-------VLP-----VGDMSI 115 Thermomonospora...
WP_012895665  71 -EVFLSDIAASWDFPLAQQALE-YLD--VPV--------------PDEDE-LDai--lQDE-ET--ALP-----AGDLSI 121 Streptosporangi...
WP_011720854  89 -RVFVSDVRMLAVSDIAERFFA-DLV--VDT--------------AETET-DDavagaRMR-AD--AQP-----GGDTGI 141 Acidothermus ce...
WP_012895664  77 -RAFLSDAQAGLSDQLGELFTE-LAG--VAP------------------D-KD-----TPD-LG--VRP-----AGDFEL 120 Streptosporangi...
WP_011290473  72 -RAFLSDMRVVYGHPAARLFLEtDGG--IDD--------------DQETE-GT-----GQN-PY--PEP-----VGDPDL 120 Thermobifida fusca
WP_011434747  66 pQVFLSDRRVLVTSDLAERLFA-DAL--PSMagl---------ttPDDED-DA-----SAV-TH--AAP-----VGDLDL 119 Frankia
ZP_05914442  140 YADRGVLAADLIEQVEKYRSDPARVVAHVGETVGFADQLQAA 181 Brevibacterium linens BL2
EFC83657     120 LADLGTPTEALLELIAEEGMLPADVISAISERAGAGEIFDDA 161 Frankia sp. EUN1f
ZP_04486547  123 LSDLGVAAATLLNLCAKDGMLPSDVTAEVASLIGCGDVVDEV 164 Stackebrandtia nassauensis DSM 44728
ZP_04334726  119 LSDLGLTEEELRSLSVGGGVLPSDVLAVVAERAGFAEILDGM 160 Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111
WP_012855236 116 FVDLGLDEMELGAISGDLDRYPDEMLADIAKRLGFGQAFDRA 157 Thermomonospora curvata
WP_012895665 122 FADLGLDEMELGILSGDIDLLPEDVLSSIAARLGFSEPFERA 163 Streptosporangium roseum
WP_011720854 142 LADFGISAKQLVAMCRREGQVPADVITEIADQLGCVDEIEvy 183 Acidothermus cellulolyticus
WP_012895664 121 LSDLGMSPEELIELSMEEGVLPADTLSVIAERLAFAEELDRL 162 Streptosporangium roseum
WP_011290473 121 LDDLGIPGTELMALTTREGILPADALTTIADRAGFAGELDEL 162 Thermobifida fusca
WP_011434747 120 LGDLGTPAEALLELIGEEGMLPGDVISALSERAGAGEILDDA 161 Frankia
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