Conserved Protein Domain Family
sam_1_link_chp

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TIGR03936: sam_1_link_chp 
radical SAM-linked protein
This model describes an uncharacterized protein encoded adjacent to, or as a fusion protein with, an uncharacterized radical SAM protein.
Statistics
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PSSM-Id: 274865
Aligned: 87 rows
Threshold Bit Score: 135.784
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EAR19147          657 RLRFRFSKTGAMALLSHLDLVRLFERALRRSGLPVSFTGGFHPLPRLQLALALPLGVEAEGEWMDLEFTE---PVDPQVA 733 Synechococ...
EEJ24937          601 RYALVFSKVDRMSLLSAIETQRLFTHVLTLADIGLKFSAGFNPQPKLSYVQAASSGLEGYNEVVLFESAP---IEDINKL 677 Denitrovib...
REF_jgi:Csac_1299   5 RYRFYFSRDLPSCFISHLDMVRLFERAFKRLGIKLKFTEGFNPHPKITFILPMAVGLCSPEEMFEVDVEE---ELD-EKV 80  Caldicellu...
EDS00383            7 AVRLFFSKTGRAKYISALDLITCFQRAIRRTDIPIWHTQGFNPHTYVNVNLPLSLGSEGINESMDIKLTE---QTDFDVV 83  [Eubacteri...
EEB54510            3 KYVLRMVKGGIIRYLSHQETSTAIERTLRRAKLPLSFTKGYHPHIKLSYLPAVLTGVATAAIYMTIETE-----SPVTDI 77  Thermotoga...
WP_011343302        2 KYLLKYSRGGELKYISHLDTMRVFERAFRRANLPMAFSEGFNPHPKFSIALPLALGHESQGELMELTLKQ---FLPPEEI 78  Carboxydot...
WP_012447009        2 KLWFSFEKIDKMKYISYLDLLNVFARAIKRAGIEPAMSKGFNPQPKVSFAQPLPLGVNSLRDYGELEIVSkpnSWDMADM 81  Natranaero...
WP_012545608      606 iVRFCHTKLGAMKYLSQLELSNLLTRALRMAKIPFVLSKGFHPKPEISFCPSLPVGIESEAEYFDLKIYG---DFKSEYl 682 Thermodesu...
WP_012645090        2 KVVLRFKKRGMKRFLSTLESIKLVERSLRRADLPLVFTEGFHPKPKMSLLDAMPVGVVNLAFYVEVHLKD---F--SGKH 76  Thermotoga...
WP_004100930        4 sYLVRFKKLGPYRFVAGLDTITMIERTFRRTNLKLTFTEGFHPKPKFSYIDPVSTGIIDLAFYVNINLEE---DYDPQVV 80  Thermosiph...
EAR19147          734 qESWQACLPPGLSLLSAEEVPVSS-PSLSQRIVFSRWRFTL-SAHSAkehsskADWEGAIAEMLREDELIWEDTDKKGRP 811 Synechococ...
EEJ24937          678 lEKINSFMPPGVNVRSINKFTI-H-PKKFDTYIRLTFR---------------EDLFSLFRDKYLKGEAFYKKLNKKGDE 740 Denitrovib...
REF_jgi:Csac_1299  81 iEKLNLILPKGLKVLKIEETIDK------IQVSDMYYKCFI-EAK--------EDFCKLFEDFMK--ENPKIRREKEGKV 143 Caldicellu...
EDS00383           84 rDKLNAVLPPDIRIIRAAL----P-VKKHTEIEKSVYSVHI------------VCNYEKLEEFMKLPAIEVEKKTKKGIT 146 [Eubacteri...
EEB54510           78 tERISKAAPFGISLLKVWEVDE-K-FDLRSVADSYQYFLFL-P-------------KNCFDPSRFSEATEITKQTKK-SR 140 Thermotoga...
WP_011343302       79 kERLNSVLPSGFKVLEVKPYLDD--KSLMSRVSKVVYRIKI-NLSNT------ELLARK--EKLLTDKPRIVKNTKRGEK 147 Carboxydot...
WP_012447009       82 iSGINKELPKGFNIFELKEPEHSKpPKLMSLVVAADYRFNCsSLAKE------NELVELCGRLKKGEDLYIDKWHKKRKE 155 Natranaero...
WP_012545608      683 -ERLNKVFPEGLRIISAKVIDPQT-PSLNAFVQRYKYLINY-P----------KTLKIEIKDMEN-------KEIRRNEK 742 Thermodesu...
WP_012645090       77 lKDLESTLPEDFPLSGAWICEE----SINKLVAF--YRFKL-ITPYF------IDFQNK-------------RVEKKGKE 130 Thermotoga...
WP_004100930       81 yNEITAVQP--LHL----KVDSVT-KNFLNLSKIEKYEFLV-FVKKP------FDFDA---------TKVIEKKTKRGIR 137 Thermosiph...
EAR19147          812 --RRr-DVRVLLKTLRLVSidaadsssSAQLELIAAVDEQGRsLKPAQLCH--WLserlDDELTLSQVRRMELG 880 Synechococcus sp...
EEJ24937          741 --KVl-NAASFVVSLGDKD-------------VVLKTETTGN-FNCYEFFE--SL----GYHRADINMKRLNTF 791 Denitrovibrio ac...
REF_jgi:Csac_1299 144 --IFr-NVWDYLLNYECNKke-----nNIEIVFHINVINGSY-IKPEDIIK--SFsekyNLEYKIVKIEREKVN 206 Caldicellulosiru...
EDS00383          147 --TL--DIKPFTEIKDYER---------GRFTLIMPSGCDFT-LNPSLFFD--AFekysGEETERLDIVRTGIL 204 [Eubacterium] si...
EEB54510          141 --KIf-LAKETYQHLSVSAl-------RNYFMVKYFQPMDKS-LSYQHLIK--IMskekSLSEKGIYVFVLEAY 201 Thermotogales ba...
WP_011343302      148 --QI--DFWQAVEALEVQEn-------G--INVVIRVG-ENS-LRPEEVAK--IFlgylPEDIEYIReeiils- 203 Carboxydothermus...
WP_012447009      156 yvKK--NITPMIYQIKTEGq-------D--IYGTFQAGSSGN-LRPDDFIS--ALln-dQKAFTKISCDRLELF 214 Natranaerobius t...
WP_012545608      743 --TY--MLKDFIEEIQIYDd-------E---LCIIVKDSEAK-ARITEIVE--ALt---GISAKELNIKRIQMY 796 Thermodesulfovib...
WP_012645090      131 --I---QFRESVVDFEILKa-------KDYYIFRYTQKRENL-LNPLFLVEkdSFfvaiCEEALTGEGEELSSF 191 Thermotoga neapo...
WP_004100930      138 --QIslDVFENVRKFEKKD----------YVVINYIIRKENT-FNPYLFSD--KVflaiRKEAyiqdnalsllf 196 Thermosipho afri...
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