Conserved Protein Domain Family
UDG_fam_dom

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TIGR03914: UDG_fam_dom 
uracil-DNA glycosylase family domain
This model represents a clade within the uracil-DNA glycosylase superfamily. Among characterized proteins, it most closely resembles the Thermus thermophilus uracil-DNA glycosylase TTUDGA, which acts uracil (deamidated cytosine) in both single-stranded DNA and U/G pairs of double-stranded DNA. This domain may occur either as a stand-alone protein or as the C-terminal domain of a fusion with another domain that always pairs with a particular radical-SAM family protein.
Statistics
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PSSM-Id: 274850
Aligned: 19 rows
Threshold Bit Score: 343.516
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EDL50599     255 LIPDLIAGAQGREAKMVEKGALEF---------------------------EERPDTLAAIDKAIHGCRKCPIGQLDNHA 307 Erythrobacter s...
EDQ04294     237 FIPQMIAEAPARARAMAEAAPTLPpvrmdrvq------------aqlsafdSAWDGPMEELPAAIRACTRCPLHCHATQA 304 Oceanibulbus in...
EDQ08684     237 AIPELIATAPARARAMAEAAPTLPplraarvq------------arlpeanPHWQGPAAELPAAINSCTLCPLYGPATQA 304 Phaeobacter gal...
EDQ18130     237 AIPDLIATAPERARQMALAAPTLPparigaiq------------aqqasyeSVWDGPPGSLPQAIAGCTRCPLHKTATQA 304 Roseobacter lit...
EAS49793     239 LIKPLIAGAEAASRRMIETAPTLPslrherqkerdm----arepdlmartsDARPTSIAAAREAASHCRACPLWEPATQT 314 Aurantimonas ma...
WP_011157305 256 LIKPLIEHAERKAHAMVAAEATAPrkpqrqe--------------ppmtraEPKADTLAHLREEAKDCRACDLWKDATQT 321 Rhodopseudomona...
WP_012171530 238 LIAPLIADAERRAGEMIAHAATPAnprphrl--------------ekaaldAEQADGLEALRAQALGCRACPLWAPATQT 303 Azorhizobium ca...
WP_011925669 240 LIRPLIAEASRRTSVMIADEGTEPhkpqkrveetamtrkpkahapaaetsrDVEAVDLQTLREEAAACRACPLWKDATQT 319 Bradyrhizobium ...
WP_012521461 238 LIPELIAKAEVRTSQMVRQAPTEPdrrivraaa---------rasrdapydGQPPATLEEVAAGVQVCRRCDLYRDATQG 308 Phenylobacteriu...
WP_011407543 238 sLPELIREAGVRVREMAERAPEPVrrrvpa---------------apapqpDTTTHSLAQLRSAARDCRRCELWQPATQT 302 Xanthomonas oryzae
EDL50599     308 VMGEGPQDAALMIVGEQPGDQEDQTGRPFVGPAGQLLDAHLEKVGIDRRAAYVTNAVKHFKYVQRGKRRLHQNPGAKEID 387 Erythrobacter s...
EDQ04294     305 VPGEGPTRADLMVVGEQPGDQEDLAGRPFVGPAGQMFDRVASEAGLDREAAYVTNAVKHFKFTARGKRRIHQRPETSEID 384 Oceanibulbus in...
EDQ08684     305 VPGEGPTDADLMIVGEQPGDQEDLVGRPFVGPAGQLFDQLATEAGLPREAAYVTNAVKHFKFLPRGRKRLHQQPNGSEIR 384 Phaeobacter gal...
EDQ18130     305 VPGEGPIDARLMIVGEQPGDQEDLIGRPFVGPAGQLFDRIAADVGLDRGQVFITNAVKHFKFVPRGRKRIHQRPNQGEVA 384 Roseobacter lit...
EAS49793     315 VFGRGPEDAPVIFVGEQPGDQEDIAGEPFIGPAGKVFDAALGEAGIDRSRAYVTNAVKHFKFAPRGKRRIHAKPNGGEVR 394 Aurantimonas ma...
WP_011157305 322 VFGEGPQHATVMLVGEQPGDKEDLAGQPFVGPAGQMLDRALAEAGVDRSKTYVTNAVKHFKFVPRGKIRLHQKPATPEIK 401 Rhodopseudomona...
WP_012171530 304 VFGEGPTDAPVMFVGEQPGDQEDLDGRPFVGPAGRLFDQALQDAGLERARAYVTNAVKHFKFEPRGKRRLHQSPNPVEIR 383 Azorhizobium ca...
WP_011925669 320 VFGEGPEHAPLMLVGEQPGDKEDLAGHPFVGPAGQMLDRALAEAGIDRSKVYVTNAVKHFKFVPRGKIRLHQKPATPEIK 399 Bradyrhizobium ...
WP_012521461 309 VPGEGPRQARLMFVGEQPGDQEDLAGRPFVGPAGGVLDKALAEAGIPRAETFVTNAVKHFKHEPRGKRRLHKTPDAGEVS 388 Phenylobacteriu...
WP_011407543 303 VFGEGPDDASVMVIGEQPGDEEDLSGRPFVGPAGRLFTMALGELGVDRQRFYVTNAVKHFRFEQRGKRRLHRNPERAHLQ 382 Xanthomonas oryzae
EDL50599     388 TCRWWIESEREIVKPKLVLAMGASAARSVLGK-TVSISRVRGAPIALENGSELWVTAHPSYLLRL-EGPAREEQARLFDA 465 Erythrobacter s...
EDQ04294     385 QCRWWVNAEVAQVQPKLILAMGATAAQSLTGS-GAGILKRRGTIEAGPEGIPVLITLHPSYLLRVpDPALREEAEAQFRS 463 Oceanibulbus in...
EDQ08684     385 HCQVWLRAELDQVRPKLILALGATAAEALLGS-GKHILQRRGTIERRVDGTPVLITLHPSYLLRVpDRYLRERATEDLRA 463 Phaeobacter gal...
EDQ18130     385 HCKWWLDAELRQVAPDLVVAMGATAAAALTGS-GKAISARRGRIEIGQAGISVLITWHPSYLLRLtDDAAREAATLELAG 463 Roseobacter lit...
EAS49793     395 ACRWWLDIERELIRPKLIVALGATAASAVLGK-TVTIRDARSTLIDLDEGTRALVTVHPSYILRLpDKVTQDRERRAFHA 473 Aurantimonas ma...
WP_011157305 402 ACRQWYERELAAVQPLLVVAMGATAAQSVLGR-ITPINKTRGHLIDRDDGPQVLVTVHPSYLLRLpDADAKAREYARFVE 480 Rhodopseudomona...
WP_012171530 384 ACNTWLAREIALVRPRLVVALGASAAQAVSGR-AVRVGESRGRIMPL-EGRDALVSVHPSYLLRLpDAEARAREYDRFVA 461 Azorhizobium ca...
WP_011925669 400 ACRPWYERELAAVQPALVVAMGASAAQAVFGK-ITQVTKNRGHIVDLPEGAQAMITVHPSYLLRLpDAEAKAREYELFVK 478 Bradyrhizobium ...
WP_012521461 389 ACRWWLDAERRIVQPRVVVALGATAALAVFGK-PTPIGKFRQQAIQLPDQAQGVVTYHPSYLLRVpDAEAKAKAYAMFLD 467 Phenylobacteriu...
WP_011407543 383 ACSGWLQAERTQLRPAQIVCLGATAAQAVLGRsGFRLMQERGQWQRLDDGTPVLTTVHPSWVLRQpSTDAREEGYRGFVE 462 Xanthomonas oryzae
EDL50599     466 DLAAV 470 Erythrobacter sp. SD-21
EDQ04294     464 DLAMA 468 Oceanibulbus indolifex HEL-45
EDQ08684     464 DLRLA 468 Phaeobacter gallaeciensis 2.10
EDQ18130     464 DLHAA 468 Roseobacter litoralis Och 149
EAS49793     474 DMALV 478 Aurantimonas manganoxydans SI85-9A1
WP_011157305 481 DLKLI 485 Rhodopseudomonas palustris
WP_012171530 462 DLRLA 466 Azorhizobium caulinodans
WP_011925669 479 DLKIa 483 Bradyrhizobium sp. ORS 278
WP_012521461 468 DLRFA 472 Phenylobacterium zucineum
WP_011407543 463 DLRQL 467 Xanthomonas oryzae
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