Conserved Protein Domain Family
rad_SAM_trio

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TIGR03913: rad_SAM_trio 
Y_X(10)_GDL-associated radical SAM protein
This narrowly distributed protein family contains an N-terminal radical SAM domain. It occurs in Pseudomonas fluorescens Pf0-1, Ralstonia solanacearum, and numerous species and strains of Burkholderia. Members always occur next to a trio of three mutually homologous genes, all of which contain the domain pfam08898 as the whole of the protein (about 60 amino acids) or as the C-terminal domain. The function is unknown, but the fact that all phylogenetically correlated proteins are mutually homologous with prominent invariant motifs (an invariant tyrosine and a GDL motif) and as small as 60 amino acids suggests that post-translational modification of pfam08898 domain-containing proteins may be its function. This view is supported by closer homology to the PqqE radical SAM protein involved in PQQ biosynthesis from the PqqA precursor peptide than to other characterized radical SAM proteins. [Unknown function, Enzymes of unknown specificity]
Statistics
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PSSM-Id: 188428
Aligned: 4 rows
Threshold Bit Score: 1029.52
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WGS:ACCE:BUC_4416   5 DARPARYLFDSDYQRFVPVHAVWEITLACDLKCLHCGSRAGHRRTNELSTAECLEVIDALARLGTREVSLIGGEAYLRKD 84  Burkholder...
WP_011333776        3 DNRPARYLSDTDLKRYVPVHVVWEITLACDLKCLHCGSRAGHRRPNELNTRECLEVIDSLAALGTREITLIGGEAYLRKD 82  Pseudomona...
WP_026020220        3 DRLPARYLSETDLKRFVPVHVVWEITLACDLKCLHCGSRAGHRRPGELNTQECLSVIDSIAALGTREVTLIGGEAYLRKD 82  Pseudomona...
WP_011001666        5 TPQPARYLHADDFKRYVPVHVVWEITLACDLKCLHCGSRAGRRRPDELNTAECLEVIESLARLGTREVSLIGGEAYLRKD 84  Ralstonia ...
WGS:ACCE:BUC_4416  85 WTQLIRAIRSHGMYCAIQTGGRNLTPKRLAQAVDAGLNGVGVSLDGLAPLHDKVRNVPGAFERALDTLRRARDAGIAVSV 164 Burkholder...
WP_011333776       83 WTQLIRAIHDHGMYCAIQTGGRNLTPAKMQAAVDAGLNGVGISLDGLAPLHDKVRNVSGSFDKAVDTLRRAKASGLAVSV 162 Pseudomona...
WP_026020220       83 WTRLIQAIHDHGMYVAIQTGGRNLTPAKMQAAVDAGLNGVGVSLDGLAPLHDAVRNVPGSFDKALDTLRRAKQAGLKVSV 162 Pseudomona...
WP_011001666       85 WTELIRAIRSHDMYCAVQTGGRNLTPKRLEQAVEAGLNGVGVSLDGLAPLHDKVRNVPGSFDRAVDTLRRARAAGLAISV 164 Ralstonia ...
WGS:ACCE:BUC_4416 165 NTQIGAQTMEDLPALMDTIIELGATHWQIQLTVAMGNAVDNDELLLQPYRLAELMPLLAKLYKDGVSRGLLMTVGNNIGY 244 Burkholder...
WP_011333776      163 NTQIGAATLPDLPELMDTIIELGATHWQIQITVAMGNAVDHPELLLQPYKLLEVMPLLARLYREGLDRGLLMNVGNNIGY 242 Pseudomona...
WP_026020220      163 NTQIGAATLPDLPALMELIIDAGASHWQIQLTVAMGNAVDHPELLLQPYQLLEVMPLLARLYREGAERGLLMNVGNNIGY 242 Pseudomona...
WP_011001666      165 NTQIGAQTMPDLPALMDTIIELGATHWQIQLTVAMGNAVDNDALLLQPYQLQELMPLLARLYKEGVSRGLLMNVGNNIGY 244 Ralstonia ...
WGS:ACCE:BUC_4416 245 YGPYEHLWRGFGDERVHWSGCAAGQNVIALEADGTVKGCPSLATVGFSGGNVRDMSLEDIWRTSEGIHFGRLRSVDDLWG 324 Burkholder...
WP_011333776      243 YGPYEHLWRGFGDERVHWSGCAAGQTVLALEADGTVKGCPSLATVGFSGGNVRNMSLHDIWHYSEGMHFGRLRSVDDLWG 322 Pseudomona...
WP_026020220      243 YGPYEHMWRGFGDDRVHWSGCAAGQTVLALEADGTVKGCPSLATVGFSGGNVRSMSLHDIWHYSEGIHFGRLRSVDDLWG 322 Pseudomona...
WP_011001666      245 YGPYEHLWRGFGDERVHWNGCAAGQTVIALEADGTVKGCPSLATVGFAGGNVRDLSLEDIWRTSEAIHFGRLRSVDDLWG 324 Ralstonia ...
WGS:ACCE:BUC_4416 325 FCRTCYYADVCRGGCTWTSHSLLGKPGNNPYCHYRVLELQKQGLRERIAKVQDAGPASFAVGRFDLVTERIADGEPVASV 404 Burkholder...
WP_011333776      323 YCRSCYYNDVCRGGCTWTSHSLLGKPGNNPYCHYRTLELQKQGLRERIVKVEDAAQRSFAVGRFDLITERIDTGEKVSSV 402 Pseudomona...
WP_026020220      323 YCRTCYYNDVCRGGCTWTSHSLLGKPGNNPYCHYRTLDLAKKGLRERIVKLEDAGPASFSVGRFDLITERIDTGEAVSSV 402 Pseudomona...
WP_011001666      325 FCRTCYYADACRGGCTWTSHSLLGKPGNNPYCHYRVLELQKQGLRERIVKEQDAAGASFAVGRFDLVTERIADGTPVASI 404 Ralstonia ...
WGS:ACCE:BUC_4416 405 VRSGQVIELAWKNRGKRSPEVGRVPPKLKMCRNCDGYVHAGEQTCPHCGGDIDAAARAHELDAQRRHALMNDLERLL 481 Burkholderia ...
WP_011333776      403 SDSGQVIKLAWINQGQSSPEEGRLPTQLALCRDCLQYIHPHESICPHCRADVAAAEARHLNDRARQQAIMKTLTGLL 479 Pseudomonas f...
WP_026020220      403 NDSGQVIKLAWVNQGQASPEEGRIPPRLALCRSCLEYIHAHESTCPHCNADVAAAEARHQEDRLRQQALINTLHQLL 479 Pseudomonas f...
WP_011001666      405 VRSGQIVELAWKHKGKRAPEVGRVPPQLSLCRSCNSYIYPHEQTCPHCGADVEAGAQAHRQEAQRRRAVVNQLEQLL 481 Ralstonia sol...
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