Conserved Protein Domain Family
TIGR03899

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TIGR03899: TIGR03899 
TIGR03899 family protein
Members of this protein family are conserved hypothetical proteins with a limited species distribution within the Gammaproteobacteria. It is common in the genera Vibrio and Shewanella, and in this resembles the C-terminal domain and putative protein sorting motif TIGR03501. This model, but design, does not extend to all homologs,but rather represents a particular clade.
Statistics
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PSSM-Id: 274842
Aligned: 20 rows
Threshold Bit Score: 301.46
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
REF_eggd:MADE_03586  51 WFARVGISPSL------MSS-DPKKQKHALERRKQILETQKASNLQAVLNIALNVTINEQTSDNLDPDWFFAFSTMAEEI 123 Alteromo...
EAR29032             37 VGQSHGVTPQY------IIN-STETLQQRASKRRQLSLLRQQQNIETIMALAIEYCPHVSSDEEPDPDWIERFIGLAEDT 109 Pseudoal...
EDK28290             50 IAQSFGLDSLIshsektNDK-AASTLIERALLREKKRKELRQKNLEQILKLAHSSCKDEAAG-DPDQDWLYRFFDMAQEI 127 Vibriona...
EDL68241             40 IAQIYGLDALLh-----NDP-PAKTALERAQLREQRRQEQRQKNLEQILKLAHSSCRDETAG-EPDQDWLYRFFDMAQDI 112 Vibrio c...
EDL52527             39 IAQAHSLDALIa-----EET-PSKSLFERAMLREKQSKEQRQKNLEQIVKAALTSCKNEVAG-EPDFDWLVRYFDMAKEI 111 Vibrio s...
EAR54247             34 IAEKYTIDGEI------NNT-QERTLNERLQIRLQKQQQQQQSNLEQIIKRAYNQCNDETAR-DPDPDWLVRFIEMAQQI 105 Photobac...
EAS43607             36 IAQKHAISAQI-------KQ-TQHDIQQRTSNRILLEQKNEQRNLERVVKVTYEACRDETAG-DPDPDWLARFFSMAKKI 106 Photobac...
WP_011576732         49 WFAQIGVSLPY------QGM-RANSIETRVQRRQKIAAQRKLSNIESVLEKALKYCIEEGENERLDPDWFYNFANMAEEI 121 Pseudoal...
WP_026029218         31 IAIQQGLAANL------QPPkPEETLLKRALYREKLLREQQQQNLEKIVKLAHDYCNDETAG-DPDPDWLHRFFEMAKDI 103 Aliivibr...
WP_011327209         40 YGPQGKVKPLY------RIN-SDNTVLARAQKRQDLLLIKQQQNIETILAMAMDFCPDVASSKQPDADWVEHFVALCGDT 112 Pseudoal...
REF_eggd:MADE_03586 124 YSQPMQELWGKIFAVEVARPGSFSLRTLQLLKTLTHRDAKVFNKAVNIASRRNNDAVPRILVGYHKRKGLLSLFKRPVPE 203 Alteromo...
EAR29032            110 SNQAMQQLWAKILAGETIKPGTFSYKSLLALKQMTLKEADALQRAVSIAGRSAQDSSCLILLGYYKKPSLLNLFRLQGKT 189 Pseudoal...
EDK28290            128 HNTSMQRLWAQVLKREVTNPGSTSMKALQILKDMTPKEALTLQRAASLGCSFGSDNSKKLLLGFKSHAGLFSFGKRDTTN 207 Vibriona...
EDL68241            113 HNSSMQKLWAQVMKREVTNPGSTSMKALKVLKDMSPREAQTLQRAATLACSFGGDSSRKLLIGYKAHGGMFSFGKRDTTS 192 Vibrio c...
EDL52527            112 HNSSMQKLWAQVLKREVTNPGSTSMKALKTLRDMTPKEAQTLQRAASLACSFGTDTSRKLLLGIRHQAGLFSFSKRESLD 191 Vibrio s...
EAR54247            106 HTPSMQKLWAKILKQEIIQPGSVSLRTLKILLSMTHREATLFQKVLTLTCCIGNDKHKKLLTSIKQRTSSFS-FHRSHQT 184 Photobac...
EAS43607            107 HSPSMQILWGKILKREILFPGSVSLKSLKTLQDMTQREAQIFQQATSLTCNFGNDKSQKLLTGIKEHKGKLSLLKKVKNH 186 Photobac...
WP_011576732        122 HSPAMQELWGKIFAVETNRPGSFSLRTLLILKQLTQKDAQTFRRAVALSSRRKGDTTPKLLTGFYQQPSILAMFRLRKEQ 201 Pseudoal...
WP_026029218        104 HDSSMQKLWSQIFKQEVISPGSTSMKALKVLKDMTQREAQTFQRAASLACSFGQDNSKKLLLGYKCAGTFFNFYKTDGPQ 183 Aliivibr...
WP_011327209        113 SNQSMQSLWAKILTGETLNPGTFSIKSLQTLKHMTQREADSLQKCVSLSGYNEKDDSHFILLGFYKKPSLFDLLRKGNKV 192 Pseudoal...
REF_eggd:MADE_03586 204 QINLATVGLSYPDLLSLQEMKLIYASEIESGVYAEGQQVTWRCVNENMTLTCKTSDVALVYYKFTSVGSELYKLVTKSPN 283 Alteromo...
EAR29032            190 NLNLSKAGLSFPNILTLMDIAVFYDQEIESTELNIGQEYRLFFKNTDLTLRAKKNGLVLTYYKFTQTGDELTTLSNPQLN 269 Pseudoal...
EDK28290            208 TINLGGHNLPYSSLLHLIELGIILGTELESGEIDFDPALHLTYQGKSMSLAPLSKGVKLVYYRFSPTGNELCTLLGNKPN 287 Vibriona...
EDL68241            193 NLNMGSFQLPYSSLLVLIELGLLHSTELESGEIGIETPLMLSYQGKNLSLQVNTKGVRLLYYRFTPTGNELCKLLGNKPN 272 Vibrio c...
EDL52527            192 ELSLGEFQFPYSSLLLLVELGILLATELESGEITKEPALKLSYQGKEMTLQPKHKGITLTYYRFTPTGNELCQLLGNRSN 271 Vibrio s...
EAR54247            185 HIDYNQYHLPYSSILILTELGLLLSTELETNLITYTDKLNFNYHTESYSLSPIKKRTSFTYYRLSPIGQELAQLIGSQTN 264 Photobac...
EAS43607            187 RIQYGAYQLSYSNLLILIDLSLLLKTELESGEIAKHIDLPFGYKSNDYSLQPIRKGITFTYYRLSPTGEELANLFGSSIN 266 Photobac...
WP_011576732        202 QLNLATFGLSYPDLLSLMDLGLIHQTEIESGEWPVNSVVEWRSNGQVFQLSARKPGTTLKYYKFTTSGAELFTLVGVNKQ 281 Pseudoal...
WP_026029218        184 LIHLGNYKLPYSSLLLLIELGLLLSTELESGEIEFEPALPLQYQGKNIAIKPMQKGSRLVYYRFSPTGAELCKLLGNKPN 263 Aliivibr...
WP_011327209        193 SLNLGKTGISFPDILTLMDLNLLYRKEIESAVLKTGQELTLSFLSQKVTLKAKNSDLVLSYYKFTQTGDELSKLINYPVN 272 Pseudoal...
REF_eggd:MADE_03586 284 NAYLQELKAVLGEVFNI 300 Alteromonas macleodii str. 'Deep ecotype'
EAR29032            270 ANYKQQLDTLFSADFEL 286 Pseudoalteromonas tunicata D2
EDK28290            288 MPYYDQLIALLSQKFTV 304 Vibrionales bacterium SWAT-3
EDL68241            273 NQYYDQMLALLNQRFSV 289 Vibrio campbellii HY01
EDL52527            272 NQYRDKLLELLNRKFIV 288 Vibrio shilonii AK1
EAR54247            265 DEYKEQLNEVLLRYFTV 281 Photobacterium sp. SKA34
EAS43607            267 QQYKDMLSNLLSQHFIV 283 Photobacterium profundum 3TCK
WP_011576732        282 ANYIEALKHILLNAFVV 298 Pseudoalteromonas atlantica
WP_026029218        264 ENYYDNLISLLSQKFMV 280 Aliivibrio fischeri
WP_011327209        273 KVYKQLLNSALESEFEL 289 Pseudoalteromonas haloplanktis
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