Conserved Protein Domain Family
lyase_spl_fam

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TIGR03886: lyase_spl_fam 
spore photoproduct lyase family protein
This uncharacterized radical SAM domain protein occurs rarely and sporadically in species that include select Alphaproteobacteria and Actinobacteria, and in Deinococcus deserti VCD115. It is a distant but full-length homolog to the Bacillus subtilis spore photoproduct lyase (spl), which monomerizes thymine dimers created as DNA damage by uv radiation.
Statistics
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PSSM-Id: 188401
Aligned: 10 rows
Threshold Bit Score: 612.144
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EEO97136       6 PSIILYTADALN-DRGRAVLSQFPQAETLEVKQHNRLPELGMNH------FKVKSDVLVLGKLKTQDIKWSGRSSDYIAP 78  Spirosoma lingu...
EEI30809      14 VRQVYAEPAALAsPRGQQVLARFPGAEVVEVPSHWKIPELHGNEgnverwVRVKSETLVLGVKKSLTARLNGRSANWIAP 93  Geodermatophilu...
EAU68658      22 VSRIYLEPAVERyTRGRDILARFPDAERVEVHSHGNIPGLFGNEgnaeawNRIKGTTLVLGVKKTMRFESNGRSADFLPP 101 Stigmatella aur...
WP_012455201   9 IDRIFHEPAVADyPRGREILSRFPNAERIEVPSHWNIPELHGNEgsvedwVRIKRSTLVLGVKKGLAMRPNGRSAHFIAP 88  Methylobacteriu...
WP_015937053   9 IRRIFAQPEALElPRGREIVQRWPDADVVPVENHWNIPELHGDEtnvprwSRIKTEALVLGVKKSLTVKPNGRSADYIAP 88  Arthrobacter ch...
WP_012695044   9 IRLIYVDPQAAQlSRGQDILNRFPDAQRIEVTSHQNIPGLHGNAglvkdwLRIKRQVLVLGIRKTLTMRPNGRSADFIAP 88  Deinococcus des...
WP_012084837  14 VTRIYYEPAAAElPRGRQVLERWPDATLVPVESHWRIPELHGDEtnvdrwVRIKREALVLGIKKSLTAKPNGRSADFIAP 93  Kineococcus rad...
WP_011560059  25 IKRIYHEPGIERfPRARAVLERYPDAERVEVLSHQAIPGLYGNEgnvedwVRNKREVLVIGEKKSLSARRNERSSDWIAP 104 Mycobacterium
WP_015928340   8 IDTIYLEPAAEAsPRGQEILARFPQARRIAVPSHWNIPDLHGNAgsaedwLRIKRSTLVLGVKKGLGLRPNGRSAHFIAP 87  Methylobacteriu...
WP_003971741  45 VREIHAEPAAAAsPRGRQILARFPDARVVEVDSHWGIPGLHGNEgnverwVRVKGETLVLGERKTLATRPNGRSADWIAP 124 Streptomyces
EEO97136      79 SLANGCFGACTYCYVDRHKN-VNPITLFTNIDENLASIDAHVNSLAWPKPMNQTDATFWTYDIGCNSDISVDYDLTLGIR 157 Spirosoma lingu...
EEI30809      94 STANGCAMACSYCYVPRQKGyANPITVFTNIEQITGYLRRHVARQGPKTEPDQCDPHAWVYDLGENSDCSVDALVSDNVA 173 Geodermatophilu...
EAU68658     102 SMANGCVMSCAYCYVPRHKGyANPVTVFVNIEDITAAIRRHAGKRGPKHEPNTVDPRYWVYDIGCNSDCSADAVLSDNVR 181 Stigmatella aur...
WP_012455201  89 STSNGCAMACAYCYVPRRKGfSNPISLFVNVEAVGAAIARHAGKQGPLPEPDQIDGQAWVYDLGENGDLSVDAMICDNVR 168 Methylobacteriu...
WP_015937053  89 STANGCAMACAYCYVPRHKGySNPVTVFANINQIAAALERHVMKQGIKLEPNQCDPELWVYDIGENSDCSVDALISDNVE 168 Arthrobacter ch...
WP_012695044  89 GMANGCALSCAYCYVPRHKGyANPITTFANIGDVDAALRKHVQRLGPKLEPNSVDPHSWVYDLGENSDLSVDALISDNVL 168 Deinococcus des...
WP_012084837  94 STANGCAMACAYCYVPRRKGySNPITVFTNIEQITGYLERHVHRQGVKPEPNQCDPASWVYDLGENSDCSVDAEVSDNVD 173 Kineococcus rad...
WP_011560059 105 STANGCAMACSYCYVPRRKGyANPITVFANIEKITGYLERHAARQGAKPEPNQCDPIDWVYDIGENSDCSADALVSDNVR 184 Mycobacterium
WP_015928340  88 SSSNGCAMACAYCYVPRRKGyANPITLFANTDEIGHAIARHAHRQGPLPAPDQIDERSWVYDIGENGDLSVDALACDSVR 167 Methylobacteriu...
WP_003971741 125 GASNGCAMACAYCYVPRRKGyANPVTVFTNIERIVAHLGRHIARQGPKREPNQCDTEAWVYDIGENGDCSVDALICDNTA 204 Streptomyces
EEO97136     158 QVFEFYRDHPKAKATFATKFVNPGMLNFDPKRKIRIRFSLMPAHISKLVDVRTDSIEKRIAAINDFHEAGYEVHVNFSPV 237 Spirosoma lingu...
EEI30809     174 DLVATFAELPTAKASFATKYVNRQLLDLDPRGRTRIRFSVMPEDDAKVLDIRTSRVAERIAAVDDFVEAGYEVHLNLSPV 253 Geodermatophilu...
EAU68658     182 DMIRLFTTLPHAMGSFATKLVNRELLTYSPRGKTRIRFSLMPPSKAKLLDVRTSPIAARIAAIDDFVAAGYEVHLNFSPV 261 Stigmatella aur...
WP_012455201 169 DLVALFRGLPNAKGSFATKAVNRDLLAYDPQGRTRIRFSLMPAQIARVVDVRTAPIRERIAAIDDFLRAGYEVHVNFSPV 248 Methylobacteriu...
WP_015937053 169 DLVGLFRELPTAKLSFATKYVNRDMLAWDHGGHTRIRFSLMPAHLAKSIDVRTSPVAERIAAINDFVDAGYEVHVNFSPV 248 Arthrobacter ch...
WP_012695044 169 DLVTLFRGLPNAKASFATKYVNRNLLTYDPQGRTRLRFSLMPASMARVVDIGTSPMPERLTAINDFVEAGYEVHLNFSPV 248 Deinococcus des...
WP_012084837 174 DLIALFRGLPTAKASFATKHVNRRLLTLDPQGRTRVRFSLMPARVAKLLDVRTSPVPERLGALDDFVAAGYEVHVNLSPV 253 Kineococcus rad...
WP_011560059 185 DLVDLFGRIPNAKASFATKLVNRDLLTYEPRGGTRVRFSLMPAETSRLVDVRTSKISDRIAAIDDFVEAGYEVHLNFSPV 264 Mycobacterium
WP_015928340 168 DLVALFRGLPNAKGSFATKFVNPDLLAYAPEGRTRIRFSLMPERVAKVVDVRTSPILTRIAAIDDFVRAGYEVHVNFSPV 247 Methylobacteriu...
WP_003971741 205 DLVHAFRQWPTAKASFATKFVNPDLLALDPRGRTRVRFSLMPPDDSRLLDVRTSPVAERIAAAGDFLEAGYEVHFNLSPV 284 Streptomyces
EEO97136     238 IVYSGpdgdkkaWRNDYRELFRQLDASLRPEVRQQLKSEVIFLTHNQRQHQANLAINPKAEELLWVPELQESKVSQFGGW 317 Spirosoma lingu...
EEI30809     254 VLREG-------WEADWAQLLRRLDDELSPAAKAQAAAEVILLTHNRDLHQVNLGWHPKAEELLWRPDLQQPKRSQNGSW 326 Geodermatophilu...
EAU68658     262 VITEG-------WQAEYRELFQQLDDSLSEKTKAQLAAEIIFLTHNERLHEVNLRWHPKAEELLWRPGLQEAKVSQGGGA 334 Stigmatella aur...
WP_012455201 249 ILYEG-------WEADWTALFDEIDGTISDAAKDQLACEIIMLTHNAGLHAVNLGWHPKAEDLLWRPDIQESKRSEGGGD 321 Methylobacteriu...
WP_015937053 249 VITET-------WLDDWRELLQQLDAALTPAAKAQLAAEVIFLTHNEGLHQVNLGWHPQAEKVLWRPDLQESKTSSNGFS 321 Arthrobacter ch...
WP_012695044 249 VIFEG-------WTAAYTELFRQIDALLSPQAKAQLAAEVIFLTHNVGLHEVNLGWHPKAEELLWTPQWQETKRSEYGGV 321 Deinococcus des...
WP_012084837 254 VVHED-------WLPVWAALLDELGDATNDATKAQLQAEVIFLTHEENLHRVNLGWHPKAEDLLWRPAMQETKRSQNGGV 326 Kineococcus rad...
WP_011560059 265 IVHEN-------WIADWADLLEQIADQTNDRTRRQLAAEVIFLTHNEGLHDVNLGWHPKGEELLWRPDLQQLKRSQSGQW 337 Mycobacterium
WP_015928340 248 ILYEG-------WEADWRDLFRVLDAGIGAAARAQLGAEIIFLTHNAALHAVNLRWHPRAEDWLWRPDIQETKRSEGGQE 320 Methylobacteriu...
WP_003971741 285 VLRPG-------WEEAWAQLLRQLDDVLPDRVKRQAAAEVIMLTHNLGLHEVNLGWHPRAEEVLWRPEVQQAKRSENGAL 357 Streptomyces
EEO97136     318 NIRYEHQLKRKMIAVFEDMVRDEIPWCEIRYIF 350 Spirosoma linguale DSM 74
EEI30809     327 NVRYRNDVKRAGVTRVQELVAAHAPWLRIRYAF 359 Geodermatophilus obscurus DSM 43160
EAU68658     335 NVRYRTGMKGKLVEEFKQLLSQHMPYCRVRYAF 367 Stigmatella aurantiaca DW4/3-1
WP_012455201 322 NLRYRAGWKGKWLARFKALLAERMPYCRVRYAF 354 Methylobacterium populi
WP_015937053 322 NVRYRSGSKGRYVRQLTAMIAEITPYCRVRYAF 354 Arthrobacter chlorophenolicus
WP_012695044 322 NIRYRRGLKGKAVERFTTLLRRELPYCTVRYAF 354 Deinococcus deserti
WP_012084837 327 NVRYRTGDKGRYVQQLLALIEERAPYLRVRYAF 359 Kineococcus radiotolerans
WP_011560059 338 NVRYKSPWKGKWVQQLTDLVADRLPDCRIRYAF 370 Mycobacterium
WP_015928340 321 NLRYRSGWKGRWLDRFRRLLAAELPYCRVRYAF 353 Methylobacterium nodulans
WP_003971741 358 NVRYRADVKAGAVARLRALVAAHAPWLRIRYAF 390 Streptomyces
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