Conserved Protein Domain Family
near_KaiC_dom

?
TIGR03879: near_KaiC_dom 
probable regulatory domain
This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Statistics
?
PSSM-Id: 163591
View PSSM: TIGR03879
Aligned: 14 rows
Threshold Bit Score: 88.2485
Threshold Setting Gi: 499180759
Created: 9-Oct-2014
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q58453        28 EILELIKDPIE--KVTWVDSLAIAAGALA-REKAGYTIREIADELGRTEQTIRKHLKGET-------------------- 84  Methanocaldococ...
WP_011250542  32 EVIELIKDPAE--RLTWVDSLAVAAGAIA-REKAGMTVSEIAEELGRTEQTIRKHLKGET-------------------- 88  Thermococcus ko...
WP_012548492  29 DILGGPRKLILyrNLTWVPSLIEACYAVIlRDRYMKTEAEIAEFLGLTKQTVRNILKADP-------------------- 88  Dictyoglomus th...
WP_012083128  29 DLLGGLKKLAEfrTLTWLPSLARSAFAVVlREEYLKSEDEIAEYVGLTRNTVRNILRADP-------------------- 88  Nitratiruptor s...
WP_011850465  30 EVLEAIKNPAE--RVTWVDSLYTAAAALA-RERAGLPASKIAEELGVTEATVRRHLKGET-------------------- 86  Pyrobaculum cal...
WP_010881344  25 DLLGGLHKLAEyrTLTWLPSLARAAFVIVyREEFLKTEEEIAELVGLTRQTVRNILRADP-------------------- 84  Aquifex aeolicus
WP_012122992  49 DVIQLILDPVE--RATWVDSLAVAAAALA-RYKAGYTIPQIAEELGRSESTIRNHLKGKT-------------------- 105 Ignicoccus hosp...
WP_012458813  31 DLLGGLNKLTEfrTLTWLPSLARSAYVIVlREEYLKIEEEIAEKVGLTKNTVRNILRADPtlamekikkmeelakeeake 110 Sulfurihydrogen...
WP_014346038  29 ETFEAIKDPGT--RVTWVDSLYVAAAAFA-RDRAGMPTSKIAEELGVTEATVRRHLKGET-------------------- 85  Pyrobaculum ogu...
WP_029683370  29 EVLEEIRNSAE--RLTWVDSLAVAAGALA-RAKAGMTASEIAEELGRTEATIREHVKGET-------------------- 85  Thermotoga sp. A7A
Q58453        85 ----K------------------------AGKLVRETYEMMKRG 100 Methanocaldococcus jannaschii DSM 2661
WP_011250542  89 ----K------------------------AGQLVRETYELIKQG 104 Thermococcus kodakarensis
WP_012548492  89 ----Dvvldiledel-----kkkeikthvAGGLAKLAYRKVKEE 123 Dictyoglomus thermophilum
WP_012083128  89 ----DqamykiehldelsseekkelkvhtAGGVAKLAYKLVKEG 128 Nitratiruptor sp. SB155-2
WP_011850465  87 ----K------------------------AGQVVLKVYERLAKE 102 Pyrobaculum calidifontis
WP_010881344  85 ----ElalykiqhideltkeekkelrvhtAGGIAKLAYKKVKEG 124 Aquifex aeolicus
WP_012122992 106 ----K------------------------AGKLVLETYEMLARG 121 Ignicoccus hospitalis
WP_012458813 111 lrvhT------------------------AGGIAKLAFKMVKEG 130 Sulfurihydrogenibium sp. YO3AOP1
WP_014346038  86 ----R------------------------AGQVVARAYEKLSKE 101 Pyrobaculum oguniense
WP_029683370  86 ----K------------------------AGKLVNETYELLKEG 101 Thermotoga sp. A7A
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap