Conserved Protein Domain Family
bind_CPR_0540

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TIGR03850: bind_CPR_0540 
carbohydrate ABC transporter substrate-binding protein, CPR_0540 family
Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1->3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Statistics
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PSSM-Id: 274815
Aligned: 12 rows
Threshold Bit Score: 612.076
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EEP09879            2 KRLFKLAFIAILSFFTIASCGAKSNEKATE-------------------G------------ERVTLKFAALETAYGDKM 50  Streptobac...
EDZ57988            2 KKKLLLSGMTALLSFSLIACQSNTTKVDNA-------------------Kdgk------gssEKQTLHVATLESAYGKEM 56  Bacillus c...
EDK23629           30 KKKLISLLLVASMAFSLAACGSSGGDDKDA-------------------Dkg---------gDEKTLKVAAVETAYGADM 81  Ruminococc...
EDN01117            4 KKLTALGLTLALSASLLAGCSNSTPGGATN-------------------TpapsgsqsggetTGETIKVAAIETSYGTEV 64  Pseudoflav...
WGS:ACOM:CLP_3797   3 MRIISTMLASLMMASGLIGCGSTTEVSKSK-------------------D------------EANVLKIAAFEGGYGKVY 51  Clostridiu...
EDM86748            3 KRFAASTMILAMSAATVLSPITAFADA-----------------------------------EEQELNIAIFQGGYGDAY 47  Ruminococc...
EDN78297            7 RKLMALALVSAMATSMLAGCGSGDDSGKDS-------------------Gkdad-----kgsEETVLKVAAFEGGNGTQI 62  Ruminococc...
EDS19082            2 KKILSTALVLSLAAGMLTGCGGGKSD------------------------------------DTNTLKISGLNGGYGTKG 45  Erysipelat...
EEP22406            2 KKALVSAAALACALPSFFGVANVSAE------------------------------------EKVTLDFAAIETAYGTKL 45  Catonella ...
WP_012198604        2 KKIGSILLVLTLMISLLAGCGKKDTTGEGTaptavptneaskenptekpK------------QDVTIKVAAIETAYGPDM 69  Clostridiu...
WP_014484727       10 KRVIALAGAGAML-FSVAACGGVTASDGGK-------------------T---------------TLKFAAFEGGYGADM 54  Bifidobact...
WP_013069455       42 RRAFMVGLAASAATVPLAACSPGSRTTAST-------------------Sgga-------gkASGVIKVAAFENAYGAAI 95  Propioniba...
EEP09879           51 WSEIIEAYKKInPNVEIELNQSKDIESTLPGLFQAE-DYPDVIMLALSRKAGIPENFVKEQALAELTSILDMNIPGEKVT 129 Streptobac...
EDZ57988           57 WNKVIDAYEAAnPKVDVKLTVDKNLEDVIGSNMKAG-KYPDVVLLATGRKQALTETLIKDKALEDITDVFDKNVYGEDVK 135 Bacillus c...
EDK23629           82 WKEVCSAFEKShEGVKVELTIDKKLEDVINPQMKSG-EYPDVILRAVGAESGITETFVKDNNLVDLTDVLDMTVPGEEVT 160 Ruminococc...
EDN01117           65 WQQVADAFTEQ-TGIQVELTVDKKLEDVIGPAMQGG-EYPDVIHLATGREAGLTEQFIKDHNIAEITDVLSMTVPGEDVT 142 Pseudoflav...
WGS:ACOM:CLP_3797  52 WEKLKENFEKShEGVKVELTVASNLEEVIRPQIQSG-NIPDLVYLATGRPDALTETFIKDQSLSDLTGLLNKKIPGEDVT 130 Clostridiu...
EDM86748           48 WNQMVELFEEShEGVKVNMTISPTIGDIIRPQIVAG-NVPDFICLNDGGEDGVILSLIKEHALLNLNDVFDGENYAGTGT 126 Ruminococc...
EDN78297           63 WEDIAKAFEEShDGVKVELEMSPELDKDLTKAIQNG-DVPDVVYYNLGQPSGFTETMLKEEAIADISDVF-------DDE 134 Ruminococc...
EDS19082           46 WEAVVKAFEKK-EGVKVELNLEKNIAETLRPVITSGkDVPDLIYLSVGSEGGLVDTMISDKAIAEISDVLDMKVYGEDVK 124 Erysipelat...
EEP22406           46 WPEIIEAYKQVnPNVDIKLTMEKELEDAITPRLQSG-DYPDVVLLAQSRKKALPETLIKDKALADLTDVLDMKVPGEDKT 124 Catonella ...
WP_012198604       70 WTKVCEAFEAK-TGIKVELTTDKLLEDVIGAGMKAG-DYPDVVHLATGRPAALTETLIKENGLEDLTDVLSMTVPGEDKK 147 Clostridiu...
WP_014484727       55 YKEVVAAYEKLnPDVKIELTTSKKIEDEITPGMKAG-NYPDIVELGQGSTSGLTETLLKDKAIEDVTDVLDMKVPGENKT 133 Bifidobact...
WP_013069455       96 YKQVAEAFEKA-TGAKVELTVSKTIDQELTPQVAAG-NFPDVVFMGVGGKTGFTDKFVQNKSLEPLNDILKITNKGETTT 173 Propioniba...
EEP09879          130 VRSKLTDGAV-GNNQTDPYLNGKTYLMPMFNSPTGLFFNKGLFEEKG--WEVPTTWDEMLDLAKIAKS-EGISLLTYPT- 204 Streptobac...
EDZ57988          136 VKDKLVPGLI-GTPATNPYNDGKIYMAPMFYSPTGLFYNASLLKEKG--WEVPKTWDEMWALGDKAKA-EGISLFTYPT- 210 Bacillus c...
EDK23629          161 VGDKILPGFV-ENTITNPYGDGKTYLMPMFYGPCGLFYNAGLFEEKG--WDVPTTWDEMWALGDKAKE-EGIALFTYPT- 235 Ruminococc...
EDN01117          143 VGEKIIPGFVnDSSITNPYADGKTYLAPMFYSPCGLFYNKGLFEEKG--WEVPTTWDEMWELGDKAAA-EDISLFTYPT- 218 Pseudoflav...
WGS:ACOM:CLP_3797 131 VKEKILPGFL-DTSATNPYKDGKTYLAPLFYSPTGLFYDKHLFKEKG--YEVPKTWDQMFALGDKAKN-DGLSLFTYST- 205 Clostridiu...
EDM86748          127 LRDDITDGIL-ASSKCAPYGDGDIYLAPFNSGPQGLIYNKTFFDENN--LEVPKTWDEFFALGDTVKDiDGRSLFTYQGi 203 Ruminococc...
EDN78297          135 LKDKMLDGIL-DGTDAQPYGDGKIYLAPIFYTPTGFWYNATLV-GEGkqYEIPTTWDEFFALGEQAKK-DGHALFTFPT- 210 Ruminococc...
EDS19082          125 VKDKIIPGFT-NSFATKPYGDGKLYLAPFTYDPCGLFYNAGLFEQKG--WTVPTTWDEMWELGEKAKA-EGIALFTYPT- 199 Erysipelat...
EEP22406          125 VKEKLLPGFT-DSTSTNPYNDGKTYLMPMFYSPTGLFYNKALFKAKG--WEVPKTWDQMWKLAEEAKK-ENIALFTYPT- 199 Catonella ...
WP_012198604      148 VSDKIAGGFT-ESSLTNPYNDGKTYMAPMFYSPCGLFYNKGLFAEKG--WTVPTTWDEMWTLADKAKA-EGIALFAYPT- 222 Clostridiu...
WP_014484727      134 VKDKLVDGVI-GLY-TNPYGGDKTYLMPMYYSPSGLVYNKTLLEQNG--WKMPTTWDEMFKLGDEAKA-KGISLFTYPT- 207 Bifidobact...
WP_013069455      174 IGDKLLPGMV-GNLTTNPYDDDRLMLAPTFMAPAGLVYNKTLFTKNG--WTLPATWDEFFALGDEVKA-KGVSLFTYPT- 248 Propioniba...
EEP09879          205 -TGYLDSFLPPILAAKGGPEFLNKAMSYEKGIWDSEKMNEVFKVLGEVVK--NVHPTTVANANNE-GFTKNQQLVIDNKA 280 Streptobac...
EDZ57988          211 -TGYFDTFFYSLLLGVGGPELFNKAMKYTDGVWVTSEATKSFEIIGKLAK--YTEPTTVANANDK-DYKKNQQLILDNKA 286 Bacillus c...
EDK23629          236 -TGYFDAFFYALMHETMGDD-FSKALTYEDGIWDTEGAKQAFDIVAKLAT--YTEKTTPANANDN-DFRKNQQLVLDNKA 310 Ruminococc...
EDN01117          219 -TGYFDAFFYALMYEAGGEDFFFDATHYAEGIWDTDAAKLAFDTVAKLAT--YTNPITPAQANDQ-DFTQNQQLVLDNKA 294 Pseudoflav...
WGS:ACOM:CLP_3797 206 -SGYFDCTVPALLAASGGLDLVNDAYNYKEGTWTSKEAKQALDVVGKLKN--YLEPSVVANANNQ-GFTKNQQLILDDKA 281 Clostridiu...
EDM86748          204 yPGYMEEMLWPAIANECGEEALTKIANYEEGSFNNEGVLKALTHIKEIADkgYLLEGTVGM-----NHTESQTEMMLGKA 278 Ruminococc...
EDN78297          211 -TGYFDATIYAMLAQAGGLDFYNDALKYDANTWTSDEGKKVLDTVAKLVGkdYTQEDTVSNANADgGFKINQQNVIDGKA 289 Ruminococc...
EDS19082          200 -TGYFDAFFSALLNETVGADAYTKLMEYDTKTWQSAETKKAFEIVGKLAQ--YTEANTVANANKD-NFTKNQQLILDNKA 275 Erysipelat...
EEP22406          200 -AGYLDTFFSSVIYSAGGAELFNKAMNYDPEVWSGADLTKVFETLGELAK--NTESTTVANANKD-GFTKNQQAVLDNKA 275 Catonella ...
WP_012198604      223 -AGYFDAFFYALLYEVGGADFFAKATTYTEGIWDTPEANKAFDIVEKLAS--YTEKSVPSNANND-NYLKNQQLILDNKA 298 Clostridiu...
WP_014484727      208 -AGYFDAFFNALLADIGGDQFYQDVMTYKKDVWKTDEAKEALETTYKLVTe-YLNPDTVGYANAQ-DFTKNQQSILDGKS 284 Bifidobact...
WP_013069455      249 -AGYFDTFFFALLSSIGGDDYFKKVMSYEKNIWTGSEATQALNLVGKLLTq-YTLPQTVGYANNQ-DYTKNQAALMADKA 325 Propioniba...
EEP09879          281 LFMPNGTWIVGEMAATT-PKDFKWGMTAYPAFEKGGKSYAVNFFEHIWVPAEAKNVEAAKEFIAFLYSDVAAKI-FAEKG 358 Streptobac...
EDZ57988          287 LFMPNGTWVVGEMKEAPrSKGFEWGMMALPTLDANRDRYAFTFFEQMWIPSAAKNKQLAKDFMTFVYSDKAAEI-FAESS 365 Bacillus c...
EDK23629          311 LFMPNGNWVIGEMEDAPkADGFEWGFTALPAVKEGGERASYTFFEQIWMPAEAKEQDLGKEFIAYLYSDEAAKIfFDKGG 390 Ruminococc...
EDN01117          295 LFMPNGTWIVGEMAEAPrAEGFEWGMTALPALTEGGDRYSYTFFEQMWIPAGAEHVDAAKQFIAFMYSDTAANL-FAAAG 373 Pseudoflav...
WGS:ACOM:CLP_3797 282 LFIPNGTWLPDEMKDAPrTEGFEWGFMPYPAFESGKDQYSVSFLEQMYIPKDAANKELAEDFMAYMYSDEAVKIiAENAK 361 Clostridiu...
EDM86748          279 AFITNGTWMENEMQDAPrEDGFEFAMAPIPTENADDVHYVFDSCEQFSIPAAAKNQELAKEFLRFLYSDESVSAfAEASG 358 Ruminococc...
EDN78297          290 LFMPNGNWVIGEMAAST-PADYEWGMMGVPKWSEDESQSVYTFTEQMWVPADAPNMDLAKEFVKFMYSDEVVDIcLNNKT 368 Ruminococc...
EDS19082          276 LFCPNGTWLPDEMSEAPrAEGFKWGFMALPKVSAEGDSYSSTFSEQVYIPSKAKNADLAKKFITFMYSDEAAKLfAEESG 355 Erysipelat...
EEP22406          276 LFMPNGSWVVDEMKDAPrADGFEWGMAAVPTLKEGGKQYAYTFLEHIWIPKEAKQQKAAKEFIAFLYSDKAAEI-FAKHG 354 Catonella ...
WP_012198604      299 LFMPNGTWVVGEMKYAPrVNGFEWGFTALPAIAKGEDSYSFTWFEQLWVPAAAEHKDAAKQFVAFMYSDEAAKI-FAESG 377 Clostridiu...
WP_014484727      285 LFMPNGTWIVNEMKDAPrTSGFEWGFAPVPTVKNGGTRYINTTIEAVWIPAKAKNKEAAKKFMAYLYSDEAASI-FAKTG 363 Bifidobact...
WP_013069455      326 LFCPDGSWVAGEMKDAPrSAGFAWGLTTVPAMKKE-DRHLTSFIESVWIPSGAKNKASAKTFIAWLYSDKATGL-FAKAG 403 Propioniba...
EEP09879          359 A------------VQP-----------IKN---YPfDMLSKEN-QVFYETF-K-NGANPLAGGFAATTPVEGV-DVSGT- 407 Streptobac...
EDZ57988          366 A------------IQP-----------IKG---LS-NKLTGEN-KSFYSIY-D-NGVKVGIGGFAATKAVEGV-SMPDT- 413 Bacillus c...
EDK23629          391 A------------VQP-----------IEG---MS-DMITDDNtKLYYSIY-D-TGAVAVMDAFAATEPIEGL-TTRST- 439 Ruminococc...
EDN01117          374 A------------AQP-----------VTG---IV-DQLSGDN-QIFYGIY-D-DGAKAALGSFASYKSVAGLgTVREV- 422 Pseudoflav...
WGS:ACOM:CLP_3797 362 A------------VVP-----------VKGaveIAnEYLNPLQ-VELFKIY-D-NGALPIMGGFVATNAVEGV-SWTDV- 413 Clostridiu...
EDM86748          359 A------------LYA-----------TKSareVAkDKLSTAI-YNMYGIYdE-ANASSLIMSFSAVPADCKI-NPKDE- 411 Ruminococc...
EDN78297          369 TdkesgkesdtpvVVP-----------VKG---AA-DKLPDGVtKDCYAAAtA-DDVVAVTGKWATTAPIEGL-DMAKA- 430 Ruminococc...
EDS19082          356 C------------VLPtttassylpekVKD---KDgNEIDNQK-TLFYQIY-D-NGAKSCTVGFKSVDAIEGV-DLTSAe 416 Erysipelat...
EEP22406          355 A------------VQP-----------VKG---LI-SKLPAEK-QVFYKVY-D-EGVLPGLGGFVSAEAIEGV-DLKAT- 402 Catonella ...
WP_012198604      378 A------------VQP-----------IVG---FA-DKLEGDN-KLFYSIY-D-NGAKAALGGFAATEPVEGV-NFSDT- 425 Clostridiu...
WP_014484727      364 A------------IQP-----------IKG---NT-DDLASDM-KVFYDAYnE-DNVKAVAGSFSATATVEGK-NIKDD- 412 Bifidobact...
WP_013069455      404 A------------AMP-----------TKT---GT-KGLPAEV-APFYTVY-DePGLKSTIGGFKSAKAVPGI-DMKTA- 452 Propioniba...
EEP09879          408 --VYGTINSVVNGTKSVEEWQADIVKMADTLRE 438 Streptobacillus moniliformis DSM 12112
EDZ57988          414 --LFRTIDSVVSGDKKVKDWQSSVEKVSDQLRS 444 Bacillus cereus H3081.97
EDK23629          440 --FFDPVNSLVTGDKTEQDWIDQIKADSAKFHE 470 Ruminococcus torques ATCC 27756
EDN01117          423 --FFDPVNSLVSGSMTEQEWIDSIKAASDQMRA 453 Pseudoflavonifractor capillosus ATCC 29799
WGS:ACOM:CLP_3797 414 --YLGTIDSIMSGNKTVEEWEKSLEETSGKLRE 444 Clostridium butyricum E4 str. BoNT E BL5262
EDM86748          412 --IFNPITSVMNDEMTVEEWAQNVEDAFAQVRA 442 Ruminococcus obeum ATCC 29174
EDN78297          431 --VYGPVESINTGDMTVDEWQKQLVETWEKCAD 461 Ruminococcus gnavus ATCC 29149
EDS19082          417 giLYGTVNSVVTGDKTVDEWYNAVIDAVKKYDK 449 Erysipelatoclostridium ramosum DSM 1402
EEP22406          403 --LYEAFNSVVSGDLSVKDWQSNVVEVMKQFHD 433 Catonella morbi ATCC 51271
WP_012198604      426 --VFGTVNSLVSGDKTKAQWIDLIKKDSDLLRA 456 Clostridium phytofermentans
WP_014484727      413 --LYNAVDSVASGKTTLQQWQDKLNETSNALNA 443 Bifidobacterium longum
WP_013069455      453 --LLDSVDSVASGKLSVKDWQAKVNEASNKLGG 483 Propionibacterium acnes
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