Conserved Protein Domain Family
Bac_Flav_CT_M

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TIGR03779: Bac_Flav_CT_M 
Bacteroides conjugative transposon TraM protein
Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. [Cellular processes, DNA transformation]
Statistics
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PSSM-Id: 274779
Aligned: 14 rows
Threshold Bit Score: 315.132
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011107098  35 QIQQRKKMLVYPLMGLVFLGSIYLIFAPS--DKDEAKVENVGGFNADIPQP--KG-DGIISDKKTAYEQEQ------MEN 103 Bacteroides
WP_011108379  24 EKCRRTRYIVYPAMCLLFAGSLWLIYSPS--EKERAAEEKEKGFNTDIPSP--GQ-QRMDGNKVDAYEREE------LEK 92  Bacteroides the...
WP_011202373  34 QVQQRRKMIVFPLMFLAFAGCMYLIFAPS--GKEDVNVESVGGFNADIPLP--AE-DGIIADKQKAYEQAV------ISR 102 Bacteroides fra...
WP_004291521  32 QRLKRQKMIVLPAMVLVFIGAMWLIFAPS---SGKEQPPGTDGYNTEMPDAdkAN-RQIIGDKLKAYEHGE------MEE 101 Bacteroidetes
WP_012056217  24 EKRRYMKFAVYPLFFLIFAGIVLLIYSPT--EKEKAEAEKERGFNTEIPSP--EE-SRMEGNKVSAYEREA------LSK 92  Parabacteroides...
WP_021665048  36 KKEQIKKLLVFAGLGILFLISLWLIFSPS--AEERQKEERTAGLNETVPQA--TD-GELPDDKLKGYELGR------DEE 104 Porphyromonas g...
WP_008463833  30 KMEKLKKSLIFGLMGIVCAGCLYLIFRPS--PEKESGQAI--GLNNIVPQA--AD-NEMQADKAKAYEQEM------LEQ 96  Flavobacterium
WP_012025520  10 EVKKRKMLLVLPLITLPFITLLFYVLGGGrmEAAVSSSEHKKGFNFNLPMP--KFkEDSALDKMSYYEEAAtdslklLEQ 87  Flavobacterium ...
WP_012026324  10 ESKKRKMLLMLPLITFPFLTFLFYSLGGGrmESKMAGNDERKGFNFHLPLP--KFkEDSALDKMSYYDQAAvdsiklREQ 87  Flavobacterium ...
WP_010992511   2 TRDGKSRIAILAGLGIVVVLLVW-------------------AFIASLPAS--GS-----------KEPET------GEV 43  Bacteroides fra...
WP_011107098 104 KQAD----KMRSLQDFAFSLGEE---NGNGEDLTLIDDAPAEKPKTNVIDfGAGapnnsrS------SIQSSAAAYWDMN 170 Bacteroides
WP_011108379  93 KDKY----RKNAFQEMASLFGSS---GKDTVHLPEGMAELPVEEADNPST-GSH------N------TVRSSAGAYRNMN 152 Bacteroides the...
WP_011202373 103 KQQD----KIQSLQDFGFTLDDD---TEEPQEEINLMPEEDPKPQRGGGT--------------------SSRAAYRDIN 155 Bacteroides fra...
WP_004291521 102 RQES----RNRAIGQLGDMFDREiagTENGVDFDLANPGGKEERAKPATP----------Q------TIQSSAAAYRDLN 161 Bacteroidetes
WP_012056217  93 KERG----RKDTFLEMSELFNRN---KDRKDTVPSVDSGVNLELPSVPETvQTH------N------PVRSSTSAYHDMN 153 Parabacteroides...
WP_021665048 105 KESH----RQETLGNLYDYFEKK---DETREQELSEEAASD-----------GL------H------PIERSVSRYEETS 154 Porphyromonas g...
WP_008463833  97 KQED----KRRALTTLADYWKQD---SVTADESPSSANAVQTAGQEPRET-------------------NSALGTYRKAQ 150 Flavobacterium
WP_012025520  88 IKKDpnysKSAISNDLDDEFTAE---DFEKHLFSKGIKGFNSAPLEQGKEeKVYekikalQ------KIIRQPVTADSYG 158 Flavobacterium ...
WP_012026324  88 IKKDpnyiDNKVSEDKADSFSTS---DFESRMLPKNRSAFNSQSFQDRNEqKVY------EklraleNIISQPAVP-AYG 157 Flavobacterium ...
WP_010992511  44 ILRT----RIKDSFTLDDMLQKV---GKENTSKSASLSGFDPVTEEPADTaGNE------R------EIRRIQELIRDNE 104 Bacteroides fra...
WP_011107098 171 RQLGSFYETPKEDKEK--E-ELkRQVEELT-ARL-DAKESGAGNMDEQVALMEKSYELAAKYm------------nGQng 233 Bacteroides
WP_011108379 153 RTLDNFYTRAENSERN--E-LL-RRIEELEhERQ-MKKPSQETTMEEKMALMEKSYELAARY--------------NG-- 211 Bacteroides the...
WP_011202373 156 RQLSTFYETPPVDEEK--EeLK-RQVAELT-DRL-KQQQNATPTADDQMALLEKSYELAARYm------------nGG-- 216 Bacteroides fra...
WP_004291521 162 ATLGNFYDQPKNDNAEmdE-LL-ERIASLE-SEL-ESERGKASSMDEQVALMEKSYELAAKYmggq------nggqPS-- 229 Bacteroidetes
WP_012056217 154 RSLTTIYTPRETSREE--E-LL-RRIEELE-KRQ-NMEPSQEQSLEEKMALMEKSYELAARY--------------NG-- 211 Parabacteroides...
WP_021665048 155 QMVHSFYEPPAYDYEK--EaLR-EELDMIR-SEL-ATLKEEKEEEIDHLELLEKSYRMAAKYfpasgdansrdayvRS-- 227 Porphyromonas g...
WP_008463833 151 NALGSFYQDSGGEAD---M-LR-REVAELK-SELaQRDAAPSVTVDGQLALMEKSYQMAAKYlp----------saPA-- 212 Flavobacterium
WP_012025520 159 QDMSEFESYGRSKESS--Q-EI-KKLEQMM-ASM-GTVQEPDPELQQLGGMLENILDIQHPQ--------------RV-- 216 Flavobacterium ...
WP_012026324 158 QDMREFENYGTSRGES--E-EI-KKLEGLM-STM-STTQEPDPELQQLGGMLENILDIQHPQ--------------RV-- 215 Flavobacterium ...
WP_010992511 105 RELGA-------------G-IT-VPVQQPVaSRG-KEKPALQEKKEEE-------------------------------- 136 Bacteroides fra...
WP_011107098 234 qsvppqpgqiA-QVAPSAPVQGKGNATPVKSV--------S-----DRTVSGLQQPMSNAEFVAEYS-KPRNYGFNTAVG 298 Bacteroides
WP_011108379 212 ----------K-QATTTSPAMDKRQRTAVKPVkq-----vR-----HQVVSSLSQPASNGESGNGFT-GERNVGFNTPVG 269 Bacteroides the...
WP_011202373 217 ----------QgQVAQVPVTGGIERKPDAVAVqa-----iR-----ETTVSGLQQPMSDADFIRAYS-QPRNYGFNTAVG 275 Bacteroides fra...
WP_004291521 230 ----------A-EQRAEPTTVQKGKKNKAMPIrq-----vE-----HQVVSSLSQPMSNAEFVAALS-QERNRGFNTAVG 287 Bacteroidetes
WP_012056217 212 ----------K-QTPSVIPTDDRKDRTSVKPVkr-----iR-----QEVVSSLAQPVNDGDFIAGVS-EERNTGFHTPVG 269 Parabacteroides...
WP_021665048 228 ----------Q-ERPADASAPKTAATAERAALpa-----vEllpekKAIVSSLDQPISDSAFIAEYGhKERNFGFRSADV 291 Porphyromonas g...
WP_008463833 213 ----------A-QPLQRADSSSRAKRPSIADApyfagaapE-----RKTAVSVLRPMANAGADAERGvRPNARSFYTADA 276 Flavobacterium
WP_012025520 217 ----------Q-ERLKQSSESKKGKVFTVDPNi-------E-----IDISTSLQKTSSIID-------NSKSNSFYSADE 266 Flavobacterium ...
WP_012026324 216 ----------Q-ERLRQTSESKKGKIYSVQKKe------------aENNISSLQRNADWQ------T-SLKTNEFYSLDE 265 Flavobacterium ...
WP_010992511 137 -------------------------------Vrp-----eQ-----RKAMDSVPR-------------APARRGFNTVRL 162 Bacteroides fra...
WP_011107098 299 S-GY-SIG-KNTIRACVHNDQTLMDGQTVKLRLLEPLQAGNVI-VPKNSLVSGS-AKVQGERLDILVSSLEYAGNIIPVE 373 Bacteroides
WP_011108379 270 K-VL-TSD-RNTIPACVHGTQTVSDGQALRIRLLEPMVADDRF-IPKGTILTGG-ARMEGERLDILVQAVEYKGTVIPVE 344 Bacteroides the...
WP_011202373 276 T-GY-AMG-KNTVAACIHQDQTLVDGQAVKLRLLEPMQAGNIV-VPKNTLVAGT-AKVQGERLDILVSSIEYAGNIIPVE 350 Bacteroides fra...
WP_004291521 288 T-AE-VLD-RNTIPACVHGAQSVTDGQTVRLRLLEPMAVAGRT-IPRGAVVVGT-GKIQGERLDIEITSLEYDGTIIPVE 362 Bacteroidetes
WP_012056217 270 R-TP-VSD-RNTIAACVHGTQTVSDGQALRVRLLEAMAVDDRL-IPKGTVLTGG-TRIQGERMDIVITNVEYQGTVIPVE 344 Parabacteroides...
WP_021665048 292 P-AS-SVT-RNTLRVVVDRTTTLQHGDFVQLRLLESARLHDLS-IPRHTRLMAQ-ARIDGNRMKLHITSIEYGGRIVSVQ 366 Porphyromonas g...
WP_008463833 277 KeRE-VPV-RNSIKACVDQTQSVAGESAVKLRLLEPAAIPGGT-LEKGSVLTAT-AKIQGGRLQLKISSIAFNGTILPVD 352 Flavobacterium
WP_012025520 267 S-AElDSQ-PNAIQAVIHETQIIVNGSIVKLRLSNDINLQGTV-IPKNTFLYGT-ASLKGERLEVKVDNIQFRNSIFPVE 342 Flavobacterium ...
WP_012026324 266 A-EP-AEEiQNSIEAVVHQTQTIVNGSVVKLRLTNDIFLQGTI-IPRNAFLYGM-AALKGERLEVKITNIQYNNSIFPVE 341 Flavobacterium ...
WP_010992511 163 --VR-QEE-RNAIKAFVHSTQTVMVGSTLKMQLAENCLTDDGQrIRKGTPVFGEvTGIDGERVLVKITSVNLGGNILPFQ 238 Bacteroides fra...
WP_011107098 374 LAVYDSDGQKGLSVPSSLEQEAAKEAMANIGAGLGTSISFAQSAGQQVAMDITRGLMQGGSQYLAKKFRTVKVHLKANYQ 453 Bacteroides
WP_011108379 345 LEVYDADGQRGIPVPNSMEYDAAREIAANMGTSMNGSINISTDAGAQIASDLGKGVIQGVSGYVAKKMRTVKVTLKAGHR 424 Bacteroides the...
WP_011202373 351 IAVFDTDGQKGLSVPSSMEQEAFNEAMANIGSGLGTSISFAQSAGQQVAMDVTRGLLQGTSGYLAKKFRTVKVKLKAGYK 430 Bacteroides fra...
WP_004291521 363 LAVYDTDGQPGIFIPNSMEMNAVREVAANMGGSLGSSINISTNAGAQLASDLGKGLIQGTSQYIAKKMRTVKVHLKAGYR 442 Bacteroidetes
WP_012056217 345 LEVYDADGQQGILIPNSLEYDAVREIAAGMGGSMGSSISISTDAGAQIASDLGKGVIQGVSQYITKKMRTVKVTLKAGHR 424 Parabacteroides...
WP_021665048 367 LSAFDTDGQEGVFIPGSEEVSALKEVGANMGGTVGTSFTFASSAKDQILSEAARGVMQGASQLLQKKLRTVKVTLKGGYR 446 Porphyromonas g...
WP_008463833 353 ISAFDLDGQLGLLVPYSAERTAAGQMAGNMGQQSATSLMLTQSAGQQVAADLSRGVLQGISGYFSKKVKTPKVMLKAGHQ 432 Flavobacterium
WP_012025520 343 LTIYDLDGISGIYIPGAINRDVAKASAERSIQTLGL-----TGISDSWGAQAAGMGVEAAKSLISKKVKLIKVVLKAGYQ 417 Flavobacterium ...
WP_012026324 342 LAVYDMDGIDGIYIPGAINRDVAKASADRSIQTLGL-----TGISDSWGAQAAGMGIEAAKSLMSKKVKLIKVVVKAGYQ 416 Flavobacterium ...
WP_010992511 239 KQVYSEDAIQGIYVPGNVKAETAQEAGAAGISGANTNISGGFDMGSQLVAGAANSVINATKSAASKNIRKVKVTIKTNYR 318 Bacteroides fra...
WP_011107098 454 VMLYAKQ 460 Bacteroides
WP_011108379 425 LLLHSPE 431 Bacteroides thetaiotaomicron
WP_011202373 431 VMLYAKQ 437 Bacteroides fragilis
WP_004291521 443 VMLYQEK 449 Bacteroidetes
WP_012056217 425 LLLHSPK 431 Parabacteroides distasonis
WP_021665048 447 LFLVQTK 453 Porphyromonas gingivalis
WP_008463833 433 LFLVSKK 439 Flavobacterium
WP_012025520 418 VLLYDEK 424 Flavobacterium johnsoniae
WP_012026324 417 VLLYDEK 423 Flavobacterium johnsoniae
WP_010992511 319 ILLRQPK 325 Bacteroides fragilis
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