Conserved Protein Domain Family
RPE4
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TIGR03777: RPE4 
Rickettsial palindromic element RPE4 domain
This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Links
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Statistics
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PSSM-Id: 274777
Aligned: 15 rows
Threshold Bit Score: 44.3895
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
WP_011476701  277 LSSRGLGTRSS--NkkynCKK----LDFSRFILDLVPKPRDD 312  Rickettsia bellii
KDO02740      174 VSSRGLTTGSS--K----STN----VDVKSCFLDPVVKPRDD 205  Rickettsia sp. ISO7
WP_011476701  740 MSSRGLTTGSS--K----STN----CNAVADFLDPVVKPRID 771  Rickettsia bellii
WP_011270514   47 VSSRGLSTGSSnkK----YKK----LDLSRFMLDPVDKPRDD 80   Rickettsia felis
WP_011477470   78 MSSRGLTTGSS--N----KKYkykkLRLSCFILDPVVKPRDD 113  Rickettsia bellii
WP_023507810  167 MSPRGLTTGSS---------------GFIKDFLDPVVKPRGD 193  Rickettsia monacensis
WP_008579836  290 LSSRGLTVGSN--------EI----TSTVSCSMDTVVKPRYD 319  Rickettsia endosymbiont of Ixodes scapularis
WP_017443018  523 VSPRDLITGSS-------------------NYMDTVVKPRYD 545  Candidatus Rickettsia gravesii
WP_011271238  445 LSSRNLIAGSS------------------SYFLDPVVKPRDD 468  Rickettsia felis
WP_016770168  171 MSSRGLTTGSK---------------KSLIKALDSVVKPRND 197  Rickettsia sibirica
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