Conserved Protein Domain Family
PRTRC_F
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TIGR03742: PRTRC_F 
PRTRC system protein F
A novel genetic system characterized by seven (usually) major proteins, including a ParB homolog and a ThiF homolog, is commonly found on plasmids or in bacterial chromosomal regions near phage, plasmid, or transposon markers. It is most common among the beta Proteobacteria. We designate the system PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein F. It is the most divergent of the families.
Links
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Statistics
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PSSM-Id: 274759
Aligned: 9 rows
Threshold Bit Score: 318.237
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
WP_011154221  35 DFLTLPAIPAGVPnsgLLTFGDEVDVLGLVRAQFAT--GVLRANDV-S-TP-TGAGDAFAQAMFA-WLRARTpeC--K-- 104 Cupriavidus nec...
WP_011288271   2 MALVLPRIGPQVP---RSIAPGPLLAANAMVSRFLIeaEAFDEADI-PvTW-SDSLDACRQALDG-WLKCQI--G--A-- 69  Dechloromonas a...
WP_011485920  15 GTFVLPQISSEVP---LVIGGESIAHQTLAKFSLAAekCGMELPG--G-DI-PKLESIVQMQLQG-WLDKQV--G--Ana 82  Polaromonas sp....
WP_011804867   5 PMLALPSLQPGIP---LAVASTSQASANAALCRFLIasGAVREDDL-P-DSeADPLKACQRAIDA-WIKRQI--G--P-- 72  Acidovorax sp. ...
WP_011001601   2 TALALPRLAAMPT---RYRTRDDGAAWCTPALLGLVdaDALSADDV-RrDP-ATPAELLQHTLQRhWDEITA--G--A-- 70  Ralstonia solan...
WP_011875517  35 DLLTLPSFSTEVPgavRLKWREDVNLSDLVLKHFQY--GPLRAGDV-H-DP-ADAGDAFQQAFHA-WTRRQY--GrlS-- 104 Burkholderia vi...
WP_011797950  38 GMWVLPTFSPEIP---LEISRADAEASNLADFILLAhkKGIRIPD--S-IY-TTTSELMTQQFAN-YARSQV--K--N-- 103 Polaromonas nap...
WP_011254876  32 DPLRLPRKCLAPG---AYVEHASAGLPLANLALALYeeGLITEAD--P-DW--GLAEVVKLGLMR-LTEGTL--G--D-- 96  Aromatoleum aro...
WP_011458645   6 STLCLPRISKGVP---CIVTGESEG--GSLVASLFAerEALGLPTIyP-DS-KVHRDIDEVVLKNlYELGYKpnG--Y-- 74  Albidiferax fer...

WP_011154221 105 RLSFGFsLIDIGAAKD--QL--MQFGweDEIEAPLYLAIDMPGDDVYFIG-----EARASALRAVHPHLLYTAMSLINTA 175 Cupriavidus nec...
WP_011288271  70 LHCLTP-RFALHMVSR--DG--ESYRyyGSQPPKDFDFNAVEASWCEYHEqewpvGAGLEALSARLHGLGTVVLHVLCRQ 144 Dechloromonas a...
WP_011485920  83 RACLGG-QPLISANSS--E-------------------IEFFMRAVSNLEll-klKPVIEALEAKVPGLGWYVVDVIERS 139 Polaromonas sp....
WP_011804867  73 LHCLEP-RFAINVLDE--QGhhPALRsgPPAP-----YAQLDVYWCEYREaewpvGRSLEALNEAMPHLGATVLQVLRQQ 144 Acidovorax sp. ...
WP_011001601  71 RIF----DWHLSANPS--Q---LGWWipTTTSKNLWLAITPHNNNRVDVPly-ylGPTITTLENIRKGLGQTVLAVFYDA 140 Ralstonia solan...
WP_011875517 105 RLRFTPhLFDAHAVRDvlDG--LGNGnnDDDPTPLFFGFGLEDEWVYSLEg------AIETLRSTHPLLFRTVMGALYRA 176 Burkholderia vi...
WP_011797950 104 VRVELPlDVSIVAIDK--K-------------------IEFAANATDRFQgiyqlKDSVERLNAASPGLGWFITDTIRKG 162 Polaromonas nap...
WP_011254876  97 LVFVAPvDLAVSSTLE--GCegFSVEesDPVPQTYWLALELTNALEPCFA-----GKRLLELEKAVPGLGKTALDVAQSA 169 Aromatoleum aro...
WP_011458645  75 SERYI--KIQMSAICE--P-----YEfeDGTELLSSYVVSPADCVINLHE-------PIMSLEQSSPGLGETVMYWIKAI 138 Albidiferax fer...

WP_011154221 176 SAK--SLFLRTPEALLDLFARWHWEydstlaD-----DKNAREFLAESCDM-D--EGDIERYLPSVVRPELAPDDVlPP- 244 Cupriavidus nec...
WP_011288271 145 SAF--VYPLFTPDIACDVATYLYWC------G-----EDDEEAALDMNCGE-D--EEEREAMRAEMVTKSMLEASF-PA- 206 Dechloromonas a...
WP_011485920 140 NGR--GISIYSPAAMGYHSFSQLQG------A-----ESDEDFVKEMQAMEgE--DEPSPEELAELIEQARSDYAYlPSk 204 Polaromonas sp....
WP_011804867 145 GRY--VYPLFTPDIADDVASYVYWQ------G-----EMNEEAALDMMCEDsD--DAEREAMREEMVTRRMLDDAY-PE- 207 Acidovorax sp. ...
WP_011001601 141 LRL--LPNTLTPADTYGHASWVHWH------G-----ETDETMAIQWLYDE-G--DFETMEQAAAAYDGPTREALFe--- 201 Ralstonia solan...
WP_011875517 177 SAR--TMFIRLPDWFMYEFSCWYWD------GdphisDKDADEALKERFDD-D--TETRSAYLPSVVRPQLCPDDAdPCv 245 Burkholderia vi...
WP_011797950 163 HGV--GLTTYDPCRIANCVQLIWFD------S-----ETDQEAAAEVLDID-E--KNVTEAH----IEQARDERTFmPSd 222 Polaromonas nap...
WP_011254876 170 GAR--TTGCWSPLFVRDLSSYIYWR------G-----ADTQEEWLEELEASgE--DPDDYGFSPKQYEEGFEVD------ 228 Aromatoleum aro...
WP_011458645 139 TDKqcIPGFVTGETLFEMFSCYRLE------D-----AQTDEEAMELLLQN-GygKEDAETYLPSVIKASLGGEIFiNPq 206 Albidiferax fer...

WP_011154221 245 ---------ACHGYPASSKLRAFG------S---------RKLYELSRANNGWVKDLCVALAELnl---tlKRQGDRSAV 297 Cupriavidus nec...
WP_011288271 207 ---------WTRRWPRGLELAQCA------R---------FLRRATNRLSDPGAKATAEDALAL-------ATLEIDDSF 255 Dechloromonas a...
WP_011485920 205 vlesveghaHLLGWASPNAKHGPK------Rlkt----kqAAYLLKTAELPDGLKQCVTDAIALdcl--ygKDKGAY-TW 271 Polaromonas sp....
WP_011804867 208 ---------WARRWLVRPDKNAGG------RertqawrpcSLRRAARTLTDPHQRQIAADALAL-------SRLTLTDDF 265 Acidovorax sp. ...
WP_011001601 202 ---------YMPEWAAYPRRVLSD------R-----------QVRRIARSHPFVAKVVDAVDGIwnhvhatHATGGYADC 255 Ralstonia solan...
WP_011875517 246 --------fSGGKWRYRSALTAPE------------------LMRLRARSRGMPRRVCTEVLKLral--mrRSRS-RDLL 296 Burkholderia vi...
WP_011797950 223 flasvgghkHLLSWSQTKKEKAACrsmsasR---------VRACIHKLKLVEADRALVMAALEFhds--ikVRK-ANAAI 290 Polaromonas nap...
WP_011254876 229 -------------WACSAQMELDG------F----------ALVQALDHPDPAVGDVAEKLCELmcl--lnNRRSAFPDA 277 Aromatoleum aro...
WP_011458645 207 --------qKIKARQLRKQLDQAG------F-------------------KGAARLVQLLKKELpak--faQARDALFKG 251 Albidiferax fer...

WP_011154221 298 AGSQWAEP-----------AYSAATLAYRQS-DYVTQVLDDLYDGLNCSGDA--TLFQCFIPIAgEP-KAIRQQ----FR 358 Cupriavidus nec...
WP_011288271 256 RPDMEGEF-----------VGFGAVLSWRDG-DVTTRIYDDLLELAHQGEYCe-HMGEVQVPLD-DP-AAFGAW----QQ 316 Dechloromonas a...
WP_011485920 272 DNSQDEEQ-----------IGAACFIAWNDA-EMLFELVQHYEEDTYNSGTAmeCLCRLKVATGgTP-AEFEQM----AR 334 Polaromonas sp....
WP_011804867 266 HPDIDGEY-----------IGFGAVLSWEEG-DVTTRIYDDLLNLAHQSEYCd-RMGEVLIPLD-DP-GALQAW----FL 326 Acidovorax sp. ...
WP_011001601 256 RVDADGDS-----------ITWIAIFRWHPE-DLALRIADDFTEFVTQGEYQdaSTLVCVESES----DSLARW----LH 315 Ralstonia solan...
WP_011875517 297 HVNYAANP-----------AYALCSVIVEDN-QFVGDLLDCHFENESQSGDA--TTYSGFSRLAsTP-KAIRRQ----YA 357 Burkholderia vi...
WP_011797950 291 APNGWFEHenlhefecldaLGSLAFIVWDDS-EFAREAITHYEEYAMNGEGShsQLVGLFVELD-EP-ASWGPF----ID 363 Polaromonas nap...
WP_011254876 278 SPT-DRES-----------VYRGCLIRWDKN-DPIEQVIDDHIEYANQGADCytTLCSVWDVKItR--EDFSEW----LK 338 Aromatoleum aro...
WP_011458645 252 PPHFWQAY-----------SFDVLLVGGDQPmDAITEFIDQMDNDRSNNGESddLLFVQRAELNtNPdGSLAEHhldgLL 320 Albidiferax fer...

WP_011154221 359 DLDGMLKTIAALDRVLTLISD 379 Cupriavidus necator
WP_011288271 317 AMASRFAAIRLIDRLIHHLSA 337 Dechloromonas aromatica
WP_011485920 335 LMRAYFDQWNALGNLLVHFLD 355 Polaromonas sp. JS666
WP_011804867 327 RMGARFEAIALIDRLIHALCH 347 Acidovorax sp. JS42
WP_011001601 316 QMRANGQLARLVENLVDLIAM 336 Ralstonia solanacearum
WP_011875517 358 DLALAFRILTHLDRLLALVSQ 378 Burkholderia vietnamiensis
WP_011797950 364 AYKLYIKRYAAFSNFIGALPE 384 Polaromonas naphthalenivorans
WP_011254876 339 SYRLGLQLYKSLDQLLAMLHT 359 Aromatoleum aromaticum
WP_011458645 321 VLANIFNAWTGIEEVISLLLD 341 Albidiferax ferrireducens
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