Conserved Protein Domain Family
PRTRC_E

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TIGR03741: PRTRC_E 
PRTRC system protein E
A novel genetic system characterized by six or seven major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family averages about 150 amino acids in length, but the last third contains low-complexity sequence that complicates sequence comparisons. This model does not include the low-complexity region.
Statistics
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PSSM-Id: 274758
Aligned: 12 rows
Threshold Bit Score: 58.9351
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011950465   2 LISSLLPMLARYS--LGFDLVAGA-NdTVTLTILPRK------AEGAKDnleASETRPISITATAAEIDAELArgpdGAL 72  Sphingomonas wi...
WP_011733928   1 MFSAIHRLATQAD--LALNISASG-D-SLRVVVIPKP------KSGETH---SALITPLILEATPEELNEQFA----GIL 63  Pelobacter prop...
WP_005846721   2 FFQAINQMITAGTd-LSINIRRVN-N-NLTVAVVPR-------RSGVKD---GERIVPLILNGTPEELDAGFL----QAV 64  Bacteroides vul...
WP_012217988   1 MFQALEPLLRSAEk-LVLSLSMDG-D-NIVVFLTP---------AGGKD---AMLRQPLILKATAAELDEGFA----SAI 61  Burkholderia mu...
WP_011458643   2 FFKTIHRELSSRLasVGMAMTFPGeN-KVCLIITPTL------KAEIAEk-aPHLSAPFVLTGTPDDLDAGFV----DQF 69  Albidiferax fer...
WP_011486175   1 MLKAIERLALQCNv-VNILVKANA-G-ELSLTFVPTL------KEGG-D---PALAKPFTLHGTVEDLEAKLP----EAM 63  Polaromonas sp....
WP_011254875   1 MFETLKSFLASNT--ATLMLTSEG-D-QITVTVIPKP------KTEGAD---ASLKTPLVISGTAAELDEGFA----QVL 63  Aromatoleum aro...
WP_011154223   1 MFTELVPLVRASDk-VVVTLSMHG-D-VMSVVVLPVI------K-NAAD---AALTSPLVLSATPADLDAEFA----AAV 63  Cupriavidus nec...
WP_011485909   3 LFTKFAPLVQAGVv-VHLTMRQVG-K-EMQLEILPVC------DAGKT----GITVPPRAFLATPAELDEKIP----GFL 65  Polaromonas sp....
WP_011804865   3 MFEELFALACSATltMTVSVDEQS-D-RLTVNVIPKP------RQDAGE---PGLTQPLSLTATPQEFDVGFI----EAL 67  Acidovorax sp. ...
WP_011001603   1 MFAELHQLAQAAPl-L-VSITAEG-D-ALRVTTSSTS------TKNGG-------LLPMVLIGTPDELDRDFA----AAV 59  Ralstonia solan...
WP_011923254   4 FLQSVGAVLTTGLk-ATVELHGLG-DgKIKLLYTPDIgptpekSSEAVVqlrSAIAKPMVVSGTPEEIEEAFA----E-- 75  Pseudomonas flu...
WP_011950465  73 GQLIASRRTLA--DQIAEQRQAAEaaR--A--AAAEAAKAKAAAPKTP 114 Sphingomonas wittichii
WP_011733928  64 VQYSSKRKSLV--ETLEETTAYLD--A--A--MKEAKDKATKAATEKP 103 Pelobacter propionicus
WP_005846721  65 GTPVQKAQGIL--TNLEAFEKQAE--Q--AasQSKAARSAAEKESKEV 106 Bacteroides vulgatus
WP_012217988  62 GSFTTAHQSLG--EQVAATNAILE--A--Q--QQTQVKKAQKVLSKAS 101 Burkholderia multivorans
WP_011458643  70 KAYSEVHTSLQ--QQVTDQIKALQ--E--Q--SEAKAAKAKEDSAKKM 109 Albidiferax ferrireducens
WP_011486175  64 AQIACARASLA--EQVEATTAVLE--I--A--RKTSADKGSNALKGKP 103 Polaromonas sp. JS666
WP_011254875  64 AGYVSAHKSLA--EQLAETQAVLD--R--A--KRESAAKAVKGapkaa 103 Aromatoleum aromaticum
WP_011154223  64 TSVSESHRSLA--EQAEATKSILD--A--A--KSTQSSNATKalakaa 103 Cupriavidus necator
WP_011485909  66 DTYVSAAVSIN--DQIAVTVAVMDkaQ--E--DAREATKKAQLAKSTT 107 Polaromonas sp. JS666
WP_011804865  68 RGYREVRQSLA--QQAEATKEVIE--A--A--KAALVKKASDATVKAG 107 Acidovorax sp. JS42
WP_011001603  60 QIYEPSALSILqqAQAAATANSAA--G--K--TKAIANEPPKASSKNA 101 Ralstonia solanacearum
WP_011923254  76 --------LIT--SKAAVVRRGLS--AldE--IERLATKAVDEakskp 109 Pseudomonas fluorescens
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