Conserved Protein Domain Family
PRTRC_D

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TIGR03739: PRTRC_D 
PRTRC system protein D
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Statistics
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PSSM-Id: 274757
Aligned: 5 rows
Threshold Bit Score: 484.705
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011288262  19 AVDVGFGNTKYVSNVVGSDIRCTNFPSVAYPSMREPSGQPG---YERRKTVAIPVNGLFYEVGPEVELAAD-TFRATQMH 94  Dechloromonas a...
WP_011486267   6 AIDLGYGHTKVVSQGRDGEIKRMIFPSVAPITTRERTAESNg--MGALRTVTVCVGANNYVIGKDAYLEAD-SNYSRSRL 82  Polaromonas sp....
WP_011804873   7 AVDVGSGNTKFVTGVTGTEIRCASFPSIAYPSSGETPQWPA---SERRKTVCIPVGPLFYEVGPDVGLAAD-TFRAKQLH 82  Acidovorax sp. ...
WP_011287958   7 AVDVGSGNTKFVTAAAGTDIRCASFPSVAYPSSDDSPSWPA---SERKKTVCIPIGPLFYEVGPDVSLAAD-TFRAKQLH 82  Dechloromonas a...
WP_011154242   7 AVDVGYGNTKFAFPL-GADVAASMFPSLAPTRSASSLASHGggyFQARDVVHVTVDGAEYEVGPDVSITSAyGNNGRTLS 85  Cupriavidus nec...
WP_011288262  95 DRYTETPEYTALLRGALALMKQPEIDLLVVGLPVAALTTKKTALEKAVTGTHDIGNGKN-----VVVRKALAIAQPQGAL 169 Dechloromonas a...
WP_011486267  83 DEYSQTDGYHALMLGALALSGLREIDQLVIGLPLTTLDTYHSVMSSKYLGEHSIGATYArrkveLAVRNVLVTSQPAGAM 162 Polaromonas sp....
WP_011804873  83 DEYTESPEYMALLRGALSMMKVPHIDLLIVGLPVALFILKKAALEKAVVGSHQVGGGKT-----VTVAKAMAVAQPQGAL 157 Acidovorax sp. ...
WP_011287958  83 DEYTETPEYMALLRGALSMMKVSHIDLLVVGLPVALFTVKKSALEKAMTGRHDIGNNKV-----VTVGKAMAVPQPQGAL 157 Dechloromonas a...
WP_011154242  86 EDFVTTPEYAALLFGALHYSQARDVGQLILGLPVHTLQKYAGALQERFTGAHDFGAGD------VTIKRVVALPQPLGSL 159 Cupriavidus nec...
WP_011288262 170 VDFVEQHGKTttiEREQSLILDPGSRTFDWLVARGMRLVQNKSHSVNRGVFDILQAIAAEIGHDI---GTP-YNDIE--A 243 Dechloromonas a...
WP_011486267 163 INAVAGQPGL---KKATNLAIDMGYFTMDFLMCEGLRPFYKRSGAVQGGMSGYYDHLNGMVAEKItseGLPaQSTVDhfR 239 Polaromonas sp....
WP_011804873 158 VHYAAEHQKIetiGTEQSLVIDPGSRTFDWLVTRGMRLVQKQSHSINRGMSDVLRLLAAEISKDI---GTP-YRDFD--A 231 Acidovorax sp. ...
WP_011287958 158 VHYASEHQKMveiGNEQSLIIDPGSRTFDWLVARGMRFVQKQSYSFNRGMSDVLRLLAAEITKDI---GSP-YRDYD--A 231 Dechloromonas a...
WP_011154242 160 VTFMRQSGKEl-dPDDNCLIVDVGYFTTDWVVARGYMMDDTRSGGVPGGSSRIYKQVATLLSADE---GGEpTGDIE--R 233 Cupriavidus nec...
WP_011288262 244 IDLALRTGKN---------PVIYQKPYDISRAMPMAHSIAQQAVASMMRWIDASYS---FQNIILVGGGAYLFKKAVKEA 311 Dechloromonas a...
WP_011486267 240 LEETLSNGIQgengrtiysLRIGKLEVDITECVERASTRLTEYLDRMMTTLGGGSSmgiISSVVLAGGGARMILPAVKER 319 Polaromonas sp....
WP_011804873 232 IDLALRTGKA---------PVIFQKPYDMKKHLPLAESVAQQAVSTMRQWIETPES---LQNIILVGGGAFLFKKAVKAA 299 Acidovorax sp. ...
WP_011287958 232 IDLALRTGKQ---------PLIFQKPYDMKRLLPLAETVAEQAVSTMKEWIEAPHS---LQNIILVGGGAFLFRKAVKAA 299 Dechloromonas a...
WP_011154242 234 IDKALRQGKL---------MRYYEKMVDLRPYFEVAKAQCQMAVKEMQTRVGRTED---IAAIVLTGGGSALYSGAIRAA 301 Cupriavidus nec...
WP_011288262 312 FPK-HRILEVKDPLHANVRGFQIAGMN 337 Dechloromonas aromatica
WP_011486267 320 FGKtHDIVMQDAAQYAIANGFLHFGLA 346 Polaromonas sp. JS666
WP_011804873 300 FPK-HRIHEVKEPMFANVRGFQIAGHN 325 Acidovorax sp. JS42
WP_011287958 300 FPK-HRIHEVKEPMFANVRGFQLAGQN 325 Dechloromonas aromatica
WP_011154242 302 FPR-SHIVAMDSPCFANVRGFFDIGSA 327 Cupriavidus necator
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