Conserved Protein Domain Family
T6A_TsaD_YgjD

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TIGR03723: T6A_TsaD_YgjD 
tRNA threonylcarbamoyl adenosine modification protein TsaD
This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas (which lack a cell wall). A reasonable hypothesis is that virulence-related activities after export are secondary to a bacterial domain-wide unknown function. [Protein synthesis, tRNA and rRNA base modification]
Statistics
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PSSM-Id: 274748
Aligned: 137 rows
Threshold Bit Score: 384.855
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012245105   5 ILGIESSCDETGVGIVR---GTeLLANTVSSSMAEHVRFGGVIPEIASRAHLDAMVPTLNEALRTAGVTLDEIDAIAVTA 81  Renibacterium s...
WP_011577240   2 ILSIESSCDDSSLALTRiedAK-LIAHFKISQEKHHSSYGGVVPELASRLHAENLPLLLERIKISLNKDFSKLKAIAITN 80  Helicobacter ac...
WP_011113714   6 ILGIESSCDDLSIAIAId--NK-IVTTKTKSSSSVHANYGGVVPEIAARYHEEILHQTLNEALTEANLTINKIDLITYTE 82  Mycoplasma gall...
WP_011371767   2 ILSIESSCDDSAIAITEiatNR-LLFHKKISQELEHSVYGGVVPELAARLHAEALPRILEEC----NPYFKDLKAVAVTT 76  Sulfurimonas de...
WP_011206487   3 ILGIETSHDDASVALFSe--NK-VEILLTISQFELHEQFGGTVPELASREHSRNLAIILEKLLGK-NIDFSTIDAIAYTK 78  Mycoplasma hyop...
WP_012498495   3 IFAIESSHDDTSFALLDd--NK-PIWMKTITQTEIHKQYGGTVPEIASRLHVKNIGILIEDI--KSQININKIDLIAYTK 77  Mycoplasma arth...
WP_010924922   3 ILGIETSHDDTSIAIIEk--GK-ILKMITWSQSDFFAQYGGTIPELSSRQHSQNIIRIIDKL--KSEFDFSKIDAIAYTE 77  Mycoplasma pulm...
WP_011264650   3 ILGIESSHDDTSIAILEn--KK-VLFQLSLSQVKTHEKFGGTIPEIASREHVKNINILLTMLIEK--FDLSKLDYIAYTE 77  Mycoplasma mobile
WP_011139420   2 ILSIESSCDDSSIAITRledRA-ILFHKKISQDSAHSPHGGVVPELASRLHAVALPKILEEC----APFFPRLKAIAVTN 76  Wolinella succi...
WP_011183382   3 ILAIESSCDEFSISIIDd--GK-ILTNIISSQIDQHVNFGGVVPELAARLHLENISWVIKSALESSNTKIEEIDHVAYTE 79  Mesoplasma florum
WP_012245105  82 GPGLAGALMVGVCAAKALSLATGKPLYAINHLVAHVGVGLLDael---rlESGELPeNLGaLLVSGGHTEILRVRSLTdD 158 Renibacterium s...
WP_011577240  81 QPGLSVTLIEGLMMAKALSLSLNLPLILEDHLRGHVYSLFINe-------KKTCMP-LSV-LLVSGGHSLILEARNYE-D 150 Helicobacter ac...
WP_011113714  83 NPGLLNCLHVAKVFANTLGYLLKIPAQGINHLYGHIFSPMIDdgdclyqkSDLIYP-ALG-IVVSGGHTAIYDVQSPS-K 159 Mycoplasma gall...
WP_011371767  77 TPGLSVTLVEGVTMAKAISIALNIPIIGVNHLVGHIYSLFIE--------KESYFP-LTV-LLVSGGHTQVMEVKSFT-E 145 Sulfurimonas de...
WP_011206487  79 NPGLIGPLKIGFLFASALSLFFNKPLIPIDHLLGHFWSAAIE--------NDLEFP-VLS-LLISGGHTQLIFAENKN-N 147 Mycoplasma hyop...
WP_012498495  78 EPGLVGSLHVGYVVAQSLALILNKKIVGLNHLEGHFYSAFIG--------KEVIYP-ALG-LLVSGGHSQLVLYNSKD-D 146 Mycoplasma arth...
WP_010924922  78 KPGLIGTLQIGFLVAQALSRVLKIKAYPIDHIEGHFFSASFE--------KNYLFP-ALA-LIVSGGHSQLMLAKDKD-N 146 Mycoplasma pulm...
WP_011264650  78 KPGLIGALQIGFLFASALSISLNKKLIPINHLEAHFFSSEIT--------NEILYP-AVG-LVVSGGHSLIYYVKNVN-S 146 Mycoplasma mobile
WP_011139420  77 EPGLSVTLLEGVMMAKALALALHLPLIAVNHLKGHLYSLFLE--------QESRFP-LDV-LLVSGGHTMVLHARSFG-E 145 Wolinella succi...
WP_011183382  80 KPGLIGSLIIGKLVAETIASYIDKPLMPLHHIEGHIYGASIE--------NEFVYP-VLA-MVVSGGHTQIEIVNSPN-E 148 Mesoplasma florum
WP_012245105 159 VELLGATIDDAAGEAFDKIARILGLDYPGGPAIDRLARE--G---DPR--AVA--FPRGLTAPkymgtpeapgpHRYDFS 229 Renibacterium s...
WP_011577240 151 IKIMATSLDDSFGESFDKVSKMLNLGYPGGPVIEKLALD--Y---AHKnePLM--FPIPLKNs-----------LNLAFS 212 Helicobacter ac...
WP_011113714 160 ITLLDETLDDAIGEVYDKVGRALGLQYPAGAKIDQLYNP--E---QAE--TVE--FLKTNKL--------------SAFS 216 Mycoplasma gall...
WP_011371767 146 IKTVAKSMDDSFGESFDKVAKMMNLGYPGGPVIEALAKG--G---DRK--RYN--FTVPLFQS-----------PLIAFS 205 Sulfurimonas de...
WP_011206487 148 LEIIGSTVDDALGEIYDKIGRSLGCGYPGGPKIDLIWQQ--NnvrNME--LID--FSLPKVLE-----------NPLDFS 210 Mycoplasma hyop...
WP_012498495 147 FKIIGQTQDDAVGEVYDKVARKLNLGFPGGPLIDQIWKN------NHK--LYTahLTIPKTE------------GFFDFS 206 Mycoplasma arth...
WP_010924922 147 IEVIGSTLDDAIGEVFDKVATKLNLGFPGGPKIEALCKD--N---DFD--LVK--LTKPKTQ------------GEFDFS 205 Mycoplasma pulm...
WP_011264650 147 LEIIGETLDDAIGEVFDKISRKLNLGFPGGPIIDRISSEivG---DIK-------FTIPKTE------------RDLDFS 204 Mycoplasma mobile
WP_011139420 146 IEIIGQSMDDSFGESFDKVAKMLSLGYPGGPIVESYAKE--G---DAS--RFP--LPLPLAGK-----------KEVAFS 205 Wolinella succi...
WP_011183382 149 FEVIGATLDDAIGECYDKVARVMGLGYPGGPKIDKLAQK--G---NKE--AFI--FPISKND------------DSYDFS 207 Mesoplasma florum
WP_012245105 230 FSGLKTAVARRVEQDEAA----GVQTPRANIAASFQEAVLDGITSKAVLACR-EQGL--ETLFLGGGVAANSRLRALLAE 302 Renibacterium s...
WP_011577240 213 FSGLKNAVRLEIEKNAPN----LNEITKQKIGYHFQSVAIEHLIQQTKRYFK-TKRP--KIFGIVGGASQNLVLRKAFEN 285 Helicobacter ac...
WP_011113714 217 YSGFKSAVLRYIELNKN-----QPDFNLVQAVSSFQKFIIDDFIDRIKNVIN-KADSkyQTILLGGGVSANSYLRSELKE 290 Mycoplasma gall...
WP_011371767 206 YSGLKNSVRLAVEA--------ANEEDFKDIAASFEHIATAHIIQKLKKYFK-EVPP--KTFAIVGGASANLYLRSSIEE 274 Sulfurimonas de...
WP_011206487 211 FSGLKTQVINYTNNLKENylfsQKKVV--EIAVSFQKTVIKYLKRQLDLALKtKKNV--KTITLVGGVAANSEIRKLIKT 286 Mycoplasma hyop...
WP_012498495 207 FSGIKTNVINLINNCASR----NEQINVNQIATEFQNTIVEYLKEHMETAIK-KFSP--KCIVLAGGVSANFAIREMFYS 279 Mycoplasma arth...
WP_010924922 206 FSGMKSQVINLANQKKHS---------SKNLACSFQKEAVDYLLEKTKKCLE-KYKI--NSLILGGGVAANFLLREGFKK 273 Mycoplasma pulm...
WP_011264650 205 FSGIKTQVINYINNSKNL------DIN--NVASSFQKTTIDYIEEKLKLAIK-KHHP--QSLVVGGGVSANTELRKRLST 273 Mycoplasma mobile
WP_011139420 206 FSGLKNAVRLVIQSLQNP----PNEQEKRDICASFQATAIAHLIQKCRLYLA-TSNA--PYLAIVGGASANLALREEMER 278 Wolinella succi...
WP_011183382 208 YSGLKTAVINIIHNLTQK----GEEIPVADIAASFQYAATKIVEKKLEKAII-QFKP--KTLTVAGGVSANSEIRNIIMS 280 Mesoplasma florum
WP_012245105 303 RTSDAGIK-LLVPGISLCTDNGAMVAALGAQLVQ 335 Renibacterium salmoninarum
WP_011577240 286 LCDEFDCK-LVLAPLEFCSDNAAMIGRSSLEAYQ 318 Helicobacter acinonychis
WP_011113714 291 L----AIK-TLVPKPIYSGDNAAMIINYAQYLLN 319 Mycoplasma gallisepticum
WP_011371767 275 LLKPHGAD-LLLSELKYCSDNAAMIGRVAVEMYK 307 Sulfurimonas denitrificans
WP_011206487 287 Y-EN-KYK-VVIPKKEFCTDNGAMIAKAAQIFLK 317 Mycoplasma hyopneumoniae
WP_012498495 280 L----HKN-VFLPDLEYTTDNAMMIARLAYEKFR 308 Mycoplasma arthritidis
WP_010924922 274 L-HEN----VYIPSKELATDNAAMIAKVLYEKLK 302 Mycoplasma pulmonis
WP_011264650 274 L----HAN-VLFPKKEYTTDNGAMIAITAFLKLN 302 Mycoplasma mobile
WP_011139420 279 LGEHFGKK-LLLAPLAYCSDNAAMIGRAALESYA 311 Wolinella succinogenes
WP_011183382 281 LGKKYNITnTFVPKMEYCTDNAAMIAKLAYEKLK 314 Mesoplasma florum
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