Conserved Protein Domain Family
pupylate_PafA2

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TIGR03688: pupylate_PafA2 
proteasome accessory factor PafA2
This protein family is paralogous to (and distinct from) the PafA (proteasome accessory factor) first described in Mycobacterium tuberculosis (see TIGR03686). Members of both this family and TIGR03686 itself tend to cluster with each other, with the ubiquitin analog Pup (TIGR03687) associated with targeting to the proteasome, and with proteasome subunits themselves. [Protein fate, Degradation of proteins, peptides, and glycopeptides]
Statistics
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PSSM-Id: 274726
Aligned: 8 rows
Threshold Bit Score: 734.655
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_006767625   2 ERFIGSETEYGIATPGHTHVSPIVTSTHAVVSY--AsaRGFGEH---RVRWDFSEESPLRDSRGFDLRRYHQ--APVVDP 74  Corynebacterium...
WP_011014405   2 ARFMGSETEYGISTPSAPFLSPIVTSTHAVVAYstA--RGFGEH---RVRWDYAQESPLRDTRGFDLRRYHQ--APVVDP 74  Corynebacterium...
WP_011437026   4 RRIMGIETEYGVSVPGQPNTNQMLASSLVVNSY--AsrTSAPGS---RARWDFEEESPLRDARGFELPR-----EPAVDP 73  Frankia sp. CcI3
AHJ47027     108 QRIIGTEVEYGISSPSDPTANPILTSTQAVLAY--A--AAAGIQrakRTRWDYEVESPLRDARGFDLSRSAGp-PPVVDA 182 Mycobacterium t...
WP_010934925   2 SRFVGTETEYGIATPSNTMLSPIVTSTHAVVAF--S----LGERcasQARWDFSEESPLRDLRGFDLRRYRT--VPVVDP 73  Corynebacterium...
WP_010988078   4 RRVMGIETEYGISVPGHPNANAMLTSSQIVNAY--A--AA--MHrarRARWDFEEENPLRDARGFDLAREAAd-SSQLTD 76  Streptomyces av...
WP_011273532   4 PHIIGSETEYGIVAVNDPSASPIHTSTQAVVAY--A--EHSGQGvnrRTRWDYENESPLRDIRGFDLRRYRRgsAPVLDP 79  Corynebacterium...
WP_011068844   4 KRVMGTETEYAVSLNTPDRYNPVQLSFDVVN--------GAADShskSIRWDYRQEDPVNDARGTRLERAAArpDMLTDA 75  Bifidobacterium...
WP_006767625  75 HA------IGVANVFITNGARFYVDHAHPEYSSPEVTNAWDAMVYDAAGDHILMQAVADTAAFSSQgksvldghdpcPPL 148 Corynebacterium...
WP_011014405  75 HA------IGVANVFVPNGARFYVDHAHPEYSSPEVTNAWDAMVYDAAGDHILMQAVSDVASFTSQnrsvldghdpcPAL 148 Corynebacterium...
WP_011437026  74 SApaneddLGLANVILTSGARLYVDHAHPEFSSPEVTNPRDAVLWDKAGERVMAEAARRALSVPGS-----------KPV 142 Frankia sp. CcI3
AHJ47027     183 DE------VGAANMILTNGARLYVDHAHPEYSAPECTDPLDAVIWDKAGERVMEAAARHVASVPGA-----------AKL 245 Mycobacterium t...
WP_010934925  74 HA------LGVANSVLINGGRFYVDHAHPEYSSPETSSAFQAMLYDAAGDVVMNRAVELVAENSQRkhsvlehhdpcPPL 147 Corynebacterium...
WP_010988078  77 ED------IGLANVILTNGARLYVDHAHPEYSAPEVTNPRDAVLWDKAGERIMAEAAERAAQLPGA-----------QPI 139 Streptomyces av...
WP_011273532  80 NA------LGAANVITANGARFYVDHAHPEYSSPETTTARDAVVWDKAGDIIMHRAAEAAE----------------PEL 137 Corynebacterium...
WP_011068844  76 PQ------LNITNVIAPNGGRVYVDHAHPEYSAPETTDPFEAVRYDHAGDLIMQAATEHARKQTG------------TPI 137 Bifidobacterium...
WP_006767625 149 KIYKNNVDGKGASYGAHENYRYRRDIDFDVIAQALIPFFVTRQVIIGAGRVGLGQQGERAGFQISQRADYIEQEISLETT 228 Corynebacterium...
WP_011014405 149 KIYKNNVDGKGASYGSHENYLYSRETDFDVLAQALIPFFVCRQVIIGAGRVGLGPQGDKPGFQVSQRADYIEQEISLETT 228 Corynebacterium...
WP_011437026 143 YLYKNNTDNKGVSYGCHENYLMARSTPFGEIVRNLTPFFVSRQVVCGAGRVGIGVDGREPGFQISQRADFFEVEVGLETT 222 Frankia sp. CcI3
AHJ47027     246 QLYKNNVDGKGASYGSHENYLMSRQTPFSAIITGLTPFLVSRQVVTGSGRVGIGPSGDEPGFQLSQRSDYIEVEVGLETT 325 Mycobacterium t...
WP_010934925 148 KIYKNNVDGKGASYGSHENYLYNRETPFEEISSGLTPFFITRQVIIGAGRVGIGQYGEKSGFQISQRADYIEQEISLETT 227 Corynebacterium...
WP_010988078 140 HLYKNNTDNKGASYGTHENYLMKRETPFSDIVRHLTPFFVSRQVVTGAGRVGIGQDGHEHGFQLSQRADYFEVEVGLETT 219 Streptomyces av...
WP_011273532 138 KIYKNNVDGKGASYGSHENYLYPRDLDVEDVQAALIPHFVTRQVFCGAGRIGLGQQGEQPGFQISQRADYIETEVSLETT 217 Corynebacterium...
WP_011068844 138 ALHRNNVDGKGSCWGTHENYMMARAVPFDLVTRLMTLHFVTRQIYAGSGRVGIGENSEIPGYQLSQRADYIHAKVGLQTT 217 Bifidobacterium...
WP_006767625 229 LNRGIINTRDEPHTNAEDWGRLHVIIGDANMSQTANLLKFGMTSLVLDAI----EAGC----DFT----DLKLKQPVREV 296 Corynebacterium...
WP_011014405 229 LNRGIINTRDEPHTDADHWGRLHVIIGDANMSQTANFLKFGMTSLVLDAI----EAGV----DFS----ELKLKNAVSEV 296 Corynebacterium...
WP_011437026 223 LKRPIINTRDEPHADPEKYRRLHVIIGDANMSEVATYLKVGTTSLVLSMI----EDGW----FTA----DLSVDGPVAAL 290 Frankia sp. CcI3
AHJ47027     326 LKRGIINTRDEPHADADRYRRLHVIIGDANLAETSTYLKLGTTALVLDLI----EEGPahaiDLT----DLALARPVHAV 397 Mycobacterium t...
WP_010934925 228 LNRGIINTRDEPHADSEHFGRLHVIIGDANMSQTSNFLKIGMTTLVLDAI----EAGV----DFS----DLAVANPVAEV 295 Corynebacterium...
WP_010988078 220 LKRPIINTRDEPHADAEKYRRLHVIIGDANLSEISTYLKLGTTALVLSMI----EDGF----IAV----DLAVDQPVRTL 287 Streptomyces av...
WP_011273532 218 LNRGIVNTRDEPHAEADKWRRLHVIIGDANLSEFSNYLKFGTTALVLAAV----AQGA----YFG----DLRLLEPVADV 285 Corynebacterium...
WP_011068844 218 FERPIINTRDESHS-TDEYRRLHVIVGDANRMEVPQALKLGTTSMLLWLLehadEAGF----DLNafldELELADPVEAM 292 Bifidobacterium...
WP_006767625 297 SAISHDLTLTHQLELVDARRLTALEILGAYRD---RVVTALGdr--------lSEVDTRVLALWEEVM-------DLLAE 358 Corynebacterium...
WP_011014405 297 AKVSHDLSLTHQLRLADGSELTAIDILRRYLD---KVQPFAE-----------TPVEQRVTALWGEVL-------GLLEN 355 Corynebacterium...
WP_011437026 291 RAISHDPSLKHLVTLRDGRRMTAVQLQMEYFE---QARKYVEdrfg----advDSQTADVLSRWESIL-------GRLEV 356 Frankia sp. CcI3
AHJ47027     398 HAISRDPSLRATVALADGRELTGLALQRIYLD---RVAKLVDsr-------dpDPRAADIVETWAHVL-------DQLER 460 Mycobacterium t...
WP_010934925 296 SAISHDLTLTHKIVLRDGRTLTALELLDEYRK---RVSPQ-------------SDDDLDVLKEWSEIL-------VLLQK 352 Corynebacterium...
WP_010988078 288 HQVSHDPTLKRLVTLRSGRTLTAVQLQMEYFE---LSRKYVEerfg----adaDEQTKDVLVRWEDTL-------NRLEN 353 Streptomyces av...
WP_011273532 286 QRVSRDLDCTYRLRFYGQAERTAIETQREIRK---RVWEIMElr----------gDDLEVFELWGKIL-------DDLES 345 Corynebacterium...
WP_011068844 293 HTVSHDLTLGASLPLANGGETNAWLIQLKLRQavyQVAALVEgtdtagepawpDKSTTSIMAMWQQALidcasirHAADD 372 Bifidobacterium...
WP_006767625 359 D----PLKTSHLLDWTAKWALIQSFLGR-------GL--AIDDAKIKLVDLQYADIDPARSLHHALVRKGRMHQLVPAEE 425 Corynebacterium...
WP_011014405 356 D----LLSTSHLLDWTAKLALIKSFEAR-------GL--SINDPKMYLIDLQYSDIDPQKSLYHALVSKGRMKTLCSAQD 422 Corynebacterium...
WP_011437026 357 D----PMSCVRELDWVAKLSILEGYRSRd------GL--AWDSPRLELVDLQYHDVRPDKGLYNRLVARGRFDLVVSEEE 424 Frankia sp. CcI3
AHJ47027     461 D----PMDCAELLDWPAKLRLLDGFRQRe------NL--SWSAPRLHLVDLQYSDVRLDKGLYNRLVARGSMKRLVTEHQ 528 Mycobacterium t...
WP_010934925 353 G----PFYAADRLDWCAKWQLISSFIKR-------GV--SIDDPKIQLIDLQYADIDPAKSLYHALVRKGRMRTLVSTEQ 419 Corynebacterium...
WP_010988078 354 D----PMSLAGELDWVAKRELMEGYRRRd------DL--DWDAARLHLVDLQYADVRAEKGLYNRLAARGRMKRLLDEND 421 Streptomyces av...
WP_011273532 346 D----PMSTADRLDWTAKLQLMNAYRAR-------GL--EWTDPRLALVDLQYSDIDPRRGLYHALVRKGRMQTLLDPTE 412 Corynebacterium...
WP_011068844 373 DerlaMTGEASRIEWLLKWQLLEKLRRKitttsapGVanGWNDPRLKVIDLKWAALDPADSIFTKLEP--RTERVVSAAD 450 Bifidobacterium...
WP_006767625 426 IARAAATPPEDSRAFFRGRMIERFPESITAANWESLIITTA-AGS---------------------EVRVLTTELGGLTG 483 Corynebacterium...
WP_011014405 423 IADAAATPPQDSRAYFRGRVMDKFGESVLAANWESLIVATS-SAK---------------------EYRVHTSGLDTLTR 480 Corynebacterium...
WP_011437026 425 VTRAMTEPPEDTRAFFRGRCLALYPQQVAAASWDSVIFDIG-RDS---------------------LQRVPTLEPLRGTK 482 Frankia sp. CcI3
AHJ47027     529 VLSAVENPPTDTRAYFRGECLRRFGADIAAASWDSVIFDLG-GDS---------------------LVRIPTLEPLRGSK 586 Mycobacterium t...
WP_010934925 420 INNAAWSPPKGSRAYLRGSLISRFPDSVVQASWDSITLQTS-RDQ---------------------ATKIKMPVVQSLSA 477 Corynebacterium...
WP_010988078 422 VERARTKPPEDTRAYFRGRCLEQYADDVAAASWDSVIFDLPgRDS---------------------LQRVPTLEPLRGTR 480 Streptomyces av...
WP_011273532 413 IEAAVDTPPEATRAWLRGHLVANYSSDILSANWDSVIVDTP-DGA----------------------VQITMDDPRGFNQ 469 Corynebacterium...
WP_011068844 451 IARATTEPPEDTRAWLRAKLVAQFGDEVAAASWSRLTVRDP-HAAdegeavefygnaghmaatdhhLFSLDISDPLAFTK 529 Bifidobacterium...
WP_006767625 484 AEVGTILDTA 493 Corynebacterium efficiens
WP_011014405 481 EEAGELVEKS 490 Corynebacterium glutamicum
WP_011437026 483 AHVGELLTRC 492 Frankia sp. CcI3
AHJ47027     587 AHVGALLDSV 596 Mycobacterium tuberculosis BT2
WP_010934925 478 EAIATIDTAS 487 Corynebacterium diphtheriae
WP_010988078 481 NHVKELLDRC 490 Streptomyces avermitilis
WP_011273532 470 LLLRALLEAQ 479 Corynebacterium jeikeium
WP_011068844 530 AHCETELNSA 539 Bifidobacterium longum
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