Conserved Protein Domain Family
arCOG04112

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TIGR03682: arCOG04112 
diphthamide biosynthesis enzyme Dph2
Members of this family are the archaeal protein Dph2, members of the universal archaeal protein family designated arCOG04112. The chemical function of this protein is analogous to the radical SAM family (pfam04055), although the sequence is not homologous. The chemistry involves [4Fe-4S]-aided formation of a 3-amino-3-carboxypropyl radical rather than the canonical 5'-deoxyadenosyl radical of the radical SAM family.
Statistics
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PSSM-Id: 274721
Aligned: 17 rows
Threshold Bit Score: 290.361
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_010876932  19 NAGVVGLQFPEGLKMRAVELAEQIEs--ETGATAVISADPCFGACDVsDRKMRDM-VDLIVHYGHTPLP-LDYEVP---- 90  Methanothermoba...
WP_011696780  21 EIRRVGVQLPDGLKRSASEISRILE---ETGAEVIISGDPCYGACDI-DLQLCSM-VDLLVHIGHSEMCe-RLSDR---- 90  Methanosaeta th...
WP_010900684  34 GARKILLQLPDGLKPYAFDYFTYL----SQRYDVILSSSPVYGACDIgPSYLYDR-VDAIVQVGHSIMRnVKYPRP---- 104 Thermoplasma ac...
WP_004041521  39 DAKRVGLQFPEGLKRRGPAVADDLRqlcDDDVTFMLSGQPCYGACDL-DTYLMRR-TDVFVHFGHSPM---KESDK---- 109 Haloferax
WP_011832595  15 NAKRIAVQLPEGLKRQAAEISRALK---EEGFDVLISGDACWGACDLsLD-ALEW-ADVLVHVGHTP---VTPEKN---- 82  Methanocorpuscu...
WP_011177231  11 NAKRILLQIPDGLKPSAFRLFNMF----SKDFNVIISSQGFYGACDIgNREIYDN-VDCIVQFGHSEIPnIKYPKP---- 81  Picrophilus tor...
WP_010879298  13 NAKKVGIQLPDGLKRRAIEIAQLIE---DRGYDVVISGETSFGACDI-DLSILEV-VDVLLHFAHTPIL---KDER---- 80  Archaeoglobus f...
WP_011019885  24 veGRVLVQAPDGLKRIAREVADVLE---ARGCEVELDAGRVFGACDItPGTVVR--TDHIVHIGHYPIPeVERQIRelga 98  Methanopyrus ka...
WP_009990583  18 NAKRVLLQFPEGLKYFSIDIVKKLRek-lPNVNFIISGEPSWGACDIaEDEAQQVnADLIIHFGHTPYTwYYPKFP---- 92  Sulfolobus solf...
WP_011449567   1 ----MALQAPEGLKRFLPRLAHDLr---hLGYEVIISGDPCYGACDL-DLRARDR-ADVLVHIGHTPVDnTK---Q---- 64  Methanospirillu...
WP_010876932  91 -VIFIEAASSVEVGEVIREA----ADR----LsGH-RRIGIATTAQHLHLLDQARSLLEERGFEVVTGEGVN---TARGQ 157 Methanothermoba...
WP_011696780  91 -IVYLEARMPDDVKDVVERS----LEF----F-TK-GRVAVCTTVQHAHTIDSVIGIMRSHGIEAIAGAPSSr-tRYRGQ 158 Methanosaeta th...
WP_010900684 105 -VIFIEHYRTVDVEDINTEA----LKN----Y----RRIGLIYSIQYRPVADRVKRILESKGFEVIIGRSDRr-mTYDGQ 170 Thermoplasma ac...
WP_004041521 110 -IIYVPLFSNVDPFPIMEDA----LDD----I-EG-DEVGLVTTAQHMNRFEDMCDWLEERGYTVQTRKGDDr-lTYEGQ 177 Haloferax
WP_011832595  83 -VIYLPFQQD-IPLEILESA----VPQ----L-KKyASVGVTTTIQHAHQTKAICRWLNEHGVNAVIGEGSSr-tPLDGQ 150 Methanocorpuscu...
WP_011177231  82 -VIFIEYRN--DVIELDESI----FYD----L-KKyNTIGLLSSIQYYDEMLYVSDILKRLGIKTVIGKTDKr-mKYPGQ 148 Picrophilus tor...
WP_010879298  81 -VVYVPYFI--EYNPKIDLK----VDE---------RRIALIATAQYVHKLPEVAEWLRGKGYEVEIGSPRGr-vVYPGQ 143 Archaeoglobus f...
WP_011019885  99 tVHFLPTHGRKRVEPWMAEEavevLHN----L-GI-DRVNVCATAQYVADLELVSEILRESGIEPVIRPGDGrrvATPGL 172 Methanopyrus ka...
WP_009990583  93 -TIFINAESNLDISENALHS----LENdiskY-NG-RKISLTATLQHVRLLSKIKSFLEDKGYDIVIGKPSNr-fMFDGQ 164 Sulfolobus solf...
WP_011449567  65 -VIYELWPVDGDLT-VISDV----IPR----L-NG-RRVGLVTTIQHIHLLPRVAELIRNAGIEPVIAEPSPr-tPCPGQ 131 Methanospirillu...
WP_010876932 158 VLGCNFSAIRGT--DAD--AYLFLGSGNFHPLGIKL-FTGREVVVADPYH-GEV--RDIEEfaDRVLRVRFARISRASDA 229 Methanothermoba...
WP_011696780 159 VLGCCYSAAR-V--GAE--EALFIGTGMFHPVGLSI-ATGMRVIAADPVT-GNV--DEIDA--HDFLRWRYGIIARAADA 227 Methanosaeta th...
WP_010900684 171 VLGCNFSSVHSV--EAEveAFVIVSTGSFHALGSQI-STERPVFLLDLNE-MSL--RSMEKeaDTFIRKRYAQIYRAMDA 244 Thermoplasma ac...
WP_004041521 178 VLGCNYASAD-I--PAD--DVLYVGGGKFHPLGLAMeHPDKNVVIADPVN-NVV--TIADT--RKFMKQRYASVHKAMDA 247 Haloferax
WP_011832595 151 VLGCTYASAKNA--NAE--AYLFIGTGVFHAIGVSL-ATKKPTFSLDPFAdGIL--QEVSA--DRLLRKRFAQIEKAKSA 221 Methanocorpuscu...
WP_011177231 149 VLGCNFSAVHSSalDVD--AFLVVSTGMFHAIGAQL-ASDKDVYLLDLNE-RRI--KNIKNdvDLFIRRRYLRISRALDA 222 Picrophilus tor...
WP_010879298 144 VLGCNYSVLRGS--NAD--AVVFIGDGLFHATGAAM-YTKKKVYAYNPLS-GEL--KEVDA--RNFEKKRYLEVSKCVGK 213 Archaeoglobus f...
WP_011019885 173 VLGCNFSALD----TSL--PTIVVCSGSFHPAGVAI-RTNRPVVQIDPTK-GVLdsEDVEDviRRILAVRLSKIREFNRE 244 Methanopyrus ka...
WP_009990583 165 VLGCDYKAAEV---EAD--IYVIVSGGLFHALGLGL-ATNKPTIKLDPYL-QKS--EDITNdvRKILKVRYGKILQALDK 235 Sulfolobus solf...
WP_011449567 132 VLGCSFNAARKT--GTD--EIIFLGTGLFHPIGIQL-ATRARVFACDPIT-GRI--EEPDA--DRLLRVRFGLIQKAQNA 201 Methanospirillu...
WP_010876932 230 SRWGVVVSSKAGQMRFELALMVKKKLEEAGREALILLAENISPAALLPF-Re-LEAFVVTACPRIAIDDSQLYDR-PLLN 306 Methanothermoba...
WP_011696780 228 KSIGILISKKPGQRRCVTARRLCTLGRSKGKRMLEVYIDRIEPERVLDL-G--LDAVVSTACPRIALDDARMYSV-PILT 303 Methanosaeta th...
WP_010900684 245 KRICFLVDTRIGQRREKLARMLMDRARDLGKEAVLAYTDNISDQDIQNM-G--CDLAVYTGCPRVPIDDQDRFTV-PVLT 320 Thermoplasma ac...
WP_004041521 248 EKWGVIFCTKIGQGRMEIAEKILEDNEN----AYLITMDEVTPDRLRNF-D--MDAFVNTGCPRITTDDGPRFHK-PMLT 319 Haloferax
WP_011832595 222 KTFGILLSSKSGQARRELAERLATLNEN----ATVILIREISEMQLRNL-G--FDAYVNTACPRLALDDQSRFPV-PVLS 293 Methanocorpuscu...
WP_011177231 223 RKFCVLMDTKIGQYRRRLAEHIYRELLSLGKDAILVTADNVNPYDIENL-R--CDAVVFTGCPRVSLDDEEKFSV-PVLT 298 Picrophilus tor...
WP_010879298 214 SKAGILVSSKPGQRRLRLAEKLKKIGRENGLFCSIIYLNNVRAEELYNL-P--FDFYVNTACPRIAYDDGARFEK-PVIS 289 Archaeoglobus f...
WP_011019885 245 EGFEIVESTALGQRRPDVVRVLDRPTWR---------LRYLTEDALRSL-R--RRQCVFCGCPRVPVDEAARFKRwVLLN 312 Methanopyrus ka...
WP_009990583 236 RSWVIIQGVKVGQNRPNMIKYFYDKLTEKGYDVFTVTNKVLTLDILRNLdRnyIDVFLVTSCPRLPIDDLYNYEK-PVLT 314 Sulfolobus solf...
WP_011449567 202 ESFGIIVSSKTGQCRSELADYLCTLSDK----AYRIMLGEVSPDQLLNL-G--FPCYVNTACPRLAYDDQVRFSV-PVLT 273 Methanospirillu...
WP_010876932 307 PSELEIVLge-rsWddYT------LDEII 328 Methanothermobacter thermautotrophicus
WP_011696780 304 PPEFEIALgl-rnD--YI------FDEIL 323 Methanosaeta thermophila
WP_010900684 321 PAEFSMAFfk-ssKr-YV------LDEIV 341 Thermoplasma acidophilum
WP_004041521 320 PQEYRIAVgd-epLdaLE------FDTFH 341 Haloferax
WP_011832595 294 PAEFEIVLgk-rsWddYV------IDEIL 315 Methanocorpusculum labreanum
WP_011177231 299 PQEFKSLFikrsnK--YI------MDEIV 319 Picrophilus torridus
WP_010879298 290 PQEFELLLgl-reS--IA------MDEIe 309 Archaeoglobus fulgidus
WP_011019885 313 PAELAAVRag-wkE--YR------LDEIP 332 Methanopyrus kandleri
WP_009990583 315 PGEAKMII-----N--NS------LEPYI 330 Sulfolobus solfataricus
WP_011449567 274 PCEFEILC-----G--VRkfetyeVDEIS 295 Methanospirillum hungatei
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