1S72,3J21


Conserved Protein Domain Family
uL6_arch

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TIGR03653: uL6_arch 
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ribosomal protein uL6, archaeal form
Members of this protein family are the archaeal form ofribosomal protein uL6 (previously L9 in yeast and human). The top-scoring proteins not selected by this model are eukaryotic cytosolic uL6. Bacterial ribosomal protein L6 scores lower and is described by a distinct model. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Statistics
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PSSM-Id: 274702
Aligned: 17 rows
Threshold Bit Score: 231.02
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1S72_E         3 RVELEIPEDVDAEQDHLd-----ITVEGDNGSVTRRLWYP-DIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHG 76  Haloarcula mari...
WP_010875661   8 REEIPIPDGVDVTIDGG------VTVKGPKWELSRKFNHS-EISMAVEDDKVVLEVKFPKKKDKAMIGTVRAHISNMITG 80  Methanothermoba...
WP_011008617   7 VEEVEIPKGVSVSIERTgpfdyiVKVKGPLGEVTKEFKNT-PVVMSLQDGKIVMEVFKARKREYAILGTYKGILKNMFLG 85  Pyrobaculum aer...
WP_011021117   6 aRTIEIPEGVSVSLAQDv-----FTATGPKGTVERKLWYP-GIMIDVKDGEVVVDAEYARKEQKAMVGTFASHIRNLVKG 79  Methanosarcina ...
WP_011498205   6 KKIISIPEGVTVTFEKNv-----LSASGPKGTNTRFLWYP-GVNIEVNGSEIIVDSASSRKKQKAMVGTYTSHITNMMKG 79  Methanococcoide...
WP_011696856   6 VRRLDIPDGVDVQISGRs-----VRVKGPKGELSRELWYP-DIEIKREDSKILIRSVARKKQHLAMVGTIAAHIKNMIRG 79  Methanosaeta th...
WP_011449200   4 ERVVSIPSGVSVTMDGTv-----LHVKGPKGNLQRDMWYP-GIEITIGSEDVRFTTESQKKAVTSMVGTLASHCSNMCTG 77  Methanospirillu...
WP_011832475   3 ELIFEIPKGVTITKTGDl-----VTVKGSKGELTRTMYHP-AITITIADGSVTLVSTSARRSVYALLGTYKAHLGVMSKG 76  Methanocorpuscu...
WP_011406479   8 tEIIPIPEDVTVTINGSe-----VTVKGNGGEIKRNFNHN-KITISNDEENVTVKVAFPNKKDKAMVGTIRSHISNMIYG 81  Methanosphaera ...
WP_010978387   7 YEEIEIPQGINVNIEGMk-----IKVKGPKGEIEKDFSHIsGIEIRKEDNKIVVETTFADRRKKAQFYSIIAHIENMFTG 81  Sulfolobus toko...
1S72_E        77 VTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHG-DTDVEIDG-EELTVSGPDIEAVGQTAADIEQLTR 154 Haloarcula mari...
WP_010875661  81 VTEGFRYRMKIVYAHFPMSVKVAGDKVVIENFLGERHPRTARFVG-DTKVQVKG-DEVEITGINKEHVGQTMANIEQATK 158 Methanothermoba...
WP_011008617  86 VTRGWRYKLKVIYTHFPMLVKVQGNQLVIENFLGRKSKITLNIPK-GVKVEVKGkEDIVIEGIDRELVSTFAAAVQAATE 164 Pyrobaculum aer...
WP_011021117  80 VNEGFECKMSIVYAHFPMQVKVDGKTLIIGNFLGEKKPRFAKIIG-ETKVKVSG-NDVTITGINKEDVGQTAANIEQKTK 157 Methanosarcina ...
WP_011498205  80 VVDGFEYHMKVVYSHFPMQIKVNGKKFVINNFLGEKKPRVSNILG-ETSVKASG-DEVIVSGINKEDVGQTAANIEQKTK 157 Methanococcoide...
WP_011696856  80 VTDGFEYRMRVVYSHFPIQVKVADGKVAISNFLGERKPRFATIVG-DVNVEVGK-DEILIRGMDKEAVGQTMANIEQATR 157 Methanosaeta th...
WP_011449200  78 VTKGYLYSMKVVYSHFPIQIKVVGETLEIVNFLGEKYPRSARILP-GTTVKVGS-DEVTVTGIDKEVVGSTAANIERATR 155 Methanospirillu...
WP_011832475  77 VSEGYEYHMKIVYNHFPIQVKVAGDKVEIGNFLGEKQARYANIVE-GVKVKVQG-DELILNGINRETIGNTAANVEQACK 154 Methanocorpuscu...
WP_011406479  82 VDHGFTYKMKIVYAHFPMTVKVQGKIVTIDNFLGERSPRKAKIIGdDVKVSVKG-EDVTITGINKEHVGQTMANIEQATK 160 Methanosphaera ...
WP_010978387  82 VTKGYRYYLKIIYTHFPVTVKVSGNEVQIQNLIGEKNIRRAKIMT-GVKVNVKG-EDIIVEGQDIEKVGQTAANIELASK 159 Sulfolobus toko...
1S72_E       155 INDKDVRV---------FQDGVYITRK 172 Haloarcula marismortui
WP_010875661 159 IKGRDPRV---------FQDGIYLVSK 176 Methanothermobacter thermautotrophicus
WP_011008617 165 LHGDERPSphgregglgVVDGIYVVGY 191 Pyrobaculum aerophilum
WP_011021117 158 IKRFDPRI---------FQDGIYIVQK 175 Methanosarcina acetivorans
WP_011498205 158 IKRFDPRV---------FQDGIYIVDK 175 Methanococcoides burtonii
WP_011696856 158 VRGFDVRI---------FQDGIYLVEK 175 Methanosaeta thermophila
WP_011449200 156 IRDRDPRV---------FQDGIYIVSR 173 Methanospirillum hungatei
WP_011832475 155 VRNRDPRV---------FQDGIYITSR 172 Methanocorpusculum labreanum
WP_011406479 161 IKGRDPRI---------FQDGIYLVDK 178 Methanosphaera stadtmanae
WP_010978387 160 ITGYDRRV---------FADGIYIYKK 177 Sulfolobus tokodaii
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