Conserved Protein Domain Family
Na_symport_sm

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TIGR03647: Na_symport_sm 
putative solute:sodium symporter small subunit
Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments. [Transport and binding proteins, Unknown substrate]
Statistics
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PSSM-Id: 132686
View PSSM: TIGR03647
Aligned: 34 rows
Threshold Bit Score: 67.9918
Threshold Setting Gi: 499309732
Created: 9-Oct-2014
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_005536133  42 PFMRDHLKIIWSSFVLWALVVFGpvtLTALAPEMMTVQTpLF-GFPLHYFLVSFGAPTGALILAVVYTRYRDRLDQKYGI 120 Haloarcula arge...
WP_012546253   9 AYWRDNRILMYVILLIWFAVSYL---AAI-FASSLNSIT-IL-GFPFGYYMGSQGSLIVFVLLNYFYSMKMNELDKKYGL 82  Thermodesulfovi...
WP_011483951   9 RYWRKNLVLTAALLLIWAVVTFG---VSY-FARAL-SFR-FF-GWPFSFWMGAQGALLVYCLIIGVYAWYMNHLDVKHGV 81  Polaromonas sp....
WP_011296713  13 rsWQRNRRWICALLAVWFVVTFV---VSW-FARDL-RFD-FF-GWPFSFWVGAQGALVVYVLMTALYAWRMNRADDEADt 85  Cupriavidus pin...
WP_011196446  11 qHFRANLGLAVKLLLVWFLVSIG---AGAV-TEWLDQFR-ILtGFPLGYYMGAQGAQITFVILIFIYAFRMRAIDQKYGV 85  Symbiobacterium...
WP_011485026   9 eYWSKNLRITAILMGIWFFVTFV---MTY-FAREL-TFS-FF-GWPFSFWVAAQGALVVYCVIIWFYARYMNNLDNEYGV 81  Polaromonas sp....
WP_011324268  58 PFMRDHLRVIWLGFGIWILTTFGpvtATRLAPELMTSQMpLI-GFPLHYFLIAIGGPSAALILSVWYARKRDQIDEKYGI 136 Natronomonas ph...
WP_003814042  14 PYWRRNVRLIVLLLACWAGLTFV---PAY-FARQL-AFD-FI-GWPFSFWMAAYGAPLAYLILIVIYALVMNRFDARsrt 86  Bordetella
WP_011352647  25 RYWRFNVALIAVLMVIGFSVSFI---VPF-FAPALAGIR-FA-GFSLPFYVGAQGAILVYLVLIVVYIGLMQRADRtlrr 98  Burkholderia lata
WP_010899869  11 AYFRARTTLVVICLLIGGLVSFA---V-VAFAEAFSTFT-IL-GMPAHYYMGAQGSVVTFVVLLFVNAYVSDKIDEKFGI 84  Bacillus halodu...
WP_005536133 121 DS 122 Haloarcula argentinensis
WP_012546253  83 EE 84  Thermodesulfovibrio yellowstonii
WP_011483951  82 AD 83  Polaromonas sp. JS666
WP_011296713  86 gv 87  Cupriavidus pinatubonensis
WP_011196446  86 DE 87  Symbiobacterium thermophilum
WP_011485026  82 AE 83  Polaromonas sp. JS666
WP_011324268 137 EQ 138 Natronomonas pharaonis
WP_003814042  87 rr 88  Bordetella
WP_011352647  99 ay 100 Burkholderia lata
WP_010899869  85 DE 86  Bacillus halodurans
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