Conserved Protein Domain Family
cas1_NMENI

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TIGR03639: cas1_NMENI 
CRISPR-associated endonuclease Cas1, subtype II/NMENI
The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.
Statistics
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PSSM-Id: 274694
Aligned: 18 rows
Threshold Bit Score: 318.431
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_005791628   3 KKTLYFGNPVYLSLRNAQLVIKlpdvekatvlpetlK--KQAEVTKPIEDIGIVVLDNKQITITSGVLEALLENNCSVIT 80  Bacteroides
WP_000929489   4 WRTVVVNTHSKLSYKNNHLIFK--------------D--SYQTEMIHLSEIDILIMETTDIVLSTMLIKRLVDENILVIF 67  Streptococcus a...
WP_003723649   3 WRTVVVNSHSKLSYKNQHLVFK--------------S--AYQQEMIHLSEIDVLILETTDITLTTMLINCLVAENILILF 66  Listeria monocy...
WP_012498348   3 KRVIEISESNYTYLFLNNLVVN--------------K--DGTKITIPTSQIDTVLFENDKLTITLPLINDLVDHGINIIV 66  Mycoplasma arth...
WP_011113936  20 KKVLEVSETEFISLHLDTLIVR--------------K--HGARVTLPLKTLDTILITNPYCNISVPLLNKIVENNINLIV 83  Mycoplasma gall...
WP_002486040   2 KDVIYVENHYFVTAKENSIKFR--------------NviDKSEKFYLFEEIEAIIFDHYKSYFSHKLVIKCIENDIAIIF 67  Staphylococcus ...
WP_011475521   3 FRNVIITQHSKLSYSNNAMIVQ--------------N--KDGINQIPLVDMDILLISTTQAVITSALVSKLAESGIKVIF 66  Lactobacillus s...
WP_011283719   4 KKVVEIKETEYLFFHLNSLIVK--------------K--ENNKIVLPLSDIDTILISNPYCTISVPLINAIVSNNINLII 67  Mycoplasma syno...
WP_011264552   3 WKIVEINTDEYVHLYLNNLYIK--------------R--KNEKILLNIRDIDTILFNNQYSTISIRLLTFLAKNNVNIIF 66  Mycoplasma mobile
WP_002684946   3 WRTVVISNRAKLDLHLNHLVVR--------------G--EK-TQKVFIEEISVLIIETTAVSITAALLNELIKQKVKVIF 65  Treponema denti...
WP_005791628  81 CDSRSMPVGLMLPLYGNTTQNERFRKQLDTSLPLKKQLWQQTIQAKINNQASVLKDCM-D--EEV----KC--MRIWATN 151 Bacteroides
WP_000929489  68 CDDKRLPTAMLMPYYARHDSSLQLSRQMSWIEDVKADVWTSIIAQKILNQSFYLGECSfF--EKS----QS--IMNLYHD 139 Streptococcus a...
WP_003723649  67 CDDKRLPIGKVLPFYGRHDSSLQLTKQLEWEAELKAAVWTEIISQKILNQSTYLSMLNyD--EKA----SS--LINLHET 138 Listeria monocy...
WP_012498348  67 CGRNHMPKAQIIPFQGYYN-AKILQKQIKWDNDFKERVWRRIIKLKIRQTMVMLEHLAiL--RDD----DKvkLEDYANS 139 Mycoplasma arth...
WP_011113936  84 CNTKFQPTMQILPIS-SYYSNKNYLWQIRWTDEQKNQIWKQLVKLKIINYARLINHLNiT--TDDn--iEK--LTNYYTN 156 Mycoplasma gall...
WP_002486040  68 CDKKHSPVTQLISSYGMVNRLKRIQSQFQLSGRTKDRIWKKIVINKIFNQTRCLENNLhN--ENV----KL--MLGFAKE 139 Staphylococcus ...
WP_011475521  67 TDNKNEPVTETVNYYPNNRSLDTYLQQYEWNDHVKEILWTKIVRSKIINQIKVLK--NyQ--IDC----QD--LKIELDK 136 Lactobacillus s...
WP_011283719  68 CNKDFEPNVQLLSISG-YYSNKNFLSQINWTQEFKDKTWEKIIKLKTTNYVNLIYFFGlLnkEDV----EK--FNFYYKK 140 Mycoplasma syno...
WP_011264552  67 MNEKNEPNSYLIPIEGNHNSLKVVAEQVKWTKEYKAILWKDIIKNKIHNQKNLLIKNKlF--NNSefgiEY--FDDLINN 142 Mycoplasma mobile
WP_002684946  66 CDEKRNPASELIGYYGSHDTSEKIRLQIKWDKNIKQLVWTEVVTEKIRQQKYLLEKLNlP--Q-A----SL--LAEYITD 136 Treponema denti...
WP_005791628 152 VRSGDPDNLEARAAAYYWKSLFSdvDSFTREr-------eG-IPPNNLLNYGYAILRAVVARGLVISGLLPTLGIHHHNR 223 Bacteroides
WP_000929489 140 LEPFDPSNREGHAARIYFNTLFG--NDFSREq---------dNPINAGLDYGYSLLLSMFAREVVKCGCMTQFGLKHANQ 208 Streptococcus a...
WP_003723649 139 LAVFDPTNREGHAARIYFNQLFG--NDFTREq---------eNDINSGLNYGYTLLLSVFARELVKSGCMTQFGLKHANQ 207 Listeria monocy...
WP_012498348 140 VKAFDITNCEGHCAKLNFKILFG--EKFVRKtn------tMeDTYNAYLNYGYSVLLSYVARAICSKGYDNRLGIFHRSY 211 Mycoplasma arth...
WP_011113936 157 VVDGDLNNCEGHAAKLSFKLLYG--EDFSRSq--------KdDIINKYLNYGYIVLMTYVSRTLVKNGLDNRIGIFHKSF 226 Mycoplasma gall...
WP_002486040 140 VSSGDKSNKEAHATRIYFKDLFG--KQFKRGr--------YnDVINSGLNYGYSILRSFINKELAIHGFEMSLGIKHQSK 209 Staphylococcus ...
WP_011475521 137 LEINDMTNREAVVARKYFEKLFG--NKYSRKd---------fTPMNAALNYGYSILLSAVNKEIVSAGYVTYLGIHHQSQ 205 Lactobacillus s...
WP_011283719 141 IIPGDKNSMEGHIAKLTFKNLYG--STFNRTd--------KeNEINKFLNYGYTILMTYVSRNLVKKGYDNRIGVFHKSF 210 Mycoplasma syno...
WP_011264552 143 VNLFDISNREGHAAKVYWNMTYS--KEFIRNnsatklkfdKfEIVNAILNYGYSILRSSAIQSIIKKGLDPRFSIFHKSF 220 Mycoplasma mobile
WP_002684946 137 IDINDKTNKEAHAAKAYFAALFG--AGFSRSl---------dIPINAALNYGYSILLSAFNREIIANGYITQLGIFHDNM 205 Treponema denti...
WP_005791628 224 YNAYCLADDIMEPYRPYVDELVFSLIQEyGKnAELTKEMKTRLLTVPTLEVIIGGKRSPLMVAVGQTTASLY 295 Bacteroides
WP_000929489 209 FNQFNLASDIMEPFRPIVDRIIYENRQS-DF-----VKMKRELFSMFSETYSYNGKEMYLSNIVSDYTKKVI 274 Streptococcus agalactiae
WP_003723649 208 FNDFNLASDLMEPFRPLVDQIVYEKRNE-DFqV-----IKRSLFELFTKQFDYNDQHMFLTNIASDYTKKIV 273 Listeria monocytogenes
WP_012498348 212 SNFYPLACDLMEPFRCIVESLVYKHVRI-SRgEPNFQEFKEELFTIFYKHFNCQGENLMLIDCIDKLVVLVl 282 Mycoplasma arthritidis
WP_011113936 227 NNHFALSCDIMEPFRPIIDYLTFSYLIK-NQnDD-FKSYKKDLFISFENFIFPNGKN--LNQVIDMLIKAII 294 Mycoplasma gallisepticum
WP_002486040 210 ENPFNLADDIIEVFRPFVDNIVYEIVFK-KNiDTFDINEKKLLLNVLYERCIIDKKVVRLLDSVKIVIQSLI 280 Staphylococcus epidermidis
WP_011475521 206 ENMFNFGSDLMESFRPVVDYWLADKNFL-EF----TPDIKYGLVDLLNLEIKYNKKQMLLKNAITKYVRDVI 272 Lactobacillus salivarius
WP_011283719 211 NNHFALATDLMEPFRFLIDKLVYELLII-EKnYD-FINFKKKVFLIFEEKILLNKSPISVNEYICKLIENFI 280 Mycoplasma synoviae
WP_011264552 221 SNFFALASDLIEIFRPLVDEIAYLHKDE-TFfD---VKIKDELINVLNKKVIYKGKYFYVNDTFDQIADNLV 288 Mycoplasma mobile
WP_002684946 206 FNPFNLGSDLMEPFRPLVDAEVFKLNPQ-KFeH----EEKLKIVSVINKKVLINNKEHYLNKAIEIFVHSIF 272 Treponema denticola
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