1S72


Conserved Protein Domain Family
L3_arch

?
TIGR03626: L3_arch 
Click on image for an interactive view with Cn3D
ribosomal protein uL3, archaeal form
This model describes exclusively the archaeal class of ribosomal protein L3. A separate model (TIGR03625) describes the bacterial/organelle form, and both belong to pfam00297. Eukaryotic proteins are excluded from this model. [Protein synthesis, Ribosomal proteins: synthesis and modification]
Statistics
?
PSSM-Id: 274685
Aligned: 15 rows
Threshold Bit Score: 493.004
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1S72_B         5 SRPRKGSLGFGPRKRSTSETPRFNSWPSDD-GQPGVQGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAV 83  Haloarcula mari...
WP_011498189   5 HRPRRGSLAYSPRKRSQSHIPRFRSWPESD-AEPKLQGFAGYKVGMTHVIMIDDVKHSLTEGTEISVPVTIIETPAIRVA 83  Methanococcoide...
WP_011449216   5 HRPRMGSLAYSPRKRAKSPVPKYHAWPAYQ-GEPALQGFAGYKVGMTHVIMVDDHAHSPNEGKDIMVPVTVIEVPDMRVA 83  Methanospirillu...
WP_011021101   5 HRPKRGSLAFSPRKRAKSHIPRFRAWPEAT-GEPKLQSFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTVIETPAIRVA 83  Methanosarcina ...
WP_010879418   4 HRPRRGSLAFSPRKRAKSIVPRIRAWPECD--RVRMQGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVA 81  Archaeoglobus f...
WP_011018785  10 grprrgSLAFSPRKRASRPVPRIRSWPDEE--RVRVQGFAGYKAGMTHAIMIDDWPNSPTEGEEISVPVTILDAPPMYVA 87  Methanopyrus ka...
WP_010865582   7 RAPRRGSLGFSPRKRASRLVPRVKRWPEVDiGKPVPLAFLGYRAGMTHVFMVDDRPGRPTSGKEIFVPVTIVETPPMFVA 86  Aeropyrum pernix
WP_011177441   5 HHSRRGSMAYYPRVRAKRIQGDIRSWPEIE-GQTKVQAFAGYKVGMTHIQMVDYRKNSVTAGQVIMAPVTVVEVPPLTVM 83  Picrophilus tor...
WP_010916582   5 HHSRRGSMAYYPRVRAKSIEPRIRSWPEIS-GPVKVQGFAGFKVGMTHVEMVDYRKTSVTAGQPIFVPVTVIEVPPLDVI 83  Thermoplasma vo...
WP_011008321   6 NRPRRGSMGVYPRKRAADIVPRVRTWPEVNlGKPALLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLYVW 85  Pyrobaculum aer...
1S72_B        84 ALRAYEDTP-Y-GQ-R-PLTEVWTDEFHS-ELDRTLDVPEDHDPDAAEEQIRDAHEagdLGDLRLITHTVPDAVPSVPKK 158 Haloarcula mari...
WP_011498189  84 AIRAYGKDT-Y-GE-I-AIAEAWTDVLDK-DLSRRLKTAKNPDVNASLEKLETLVEsgrANDIRLITYTLPSTLTGVPKK 158 Methanococcoide...
WP_011449216  84 AIRVYRHDT-Y-GN-H-VLTEVWADSFDK-ELSRRLNLSKNYKREEAEKKIREALEadkIVDVVALTYTRPSVLTGVPKK 158 Methanospirillu...
WP_011021101  84 AIRAYAEDS-T-GE-K-AIAEVWAADLDP-ELKRRIPIPAAGNQAEALENIGKLIEegrVSDVRAVIYTLPKSLTGVPKK 158 Methanosarcina ...
WP_010879418  82 AVRVYKKTQ-Y-GM-Q-IAAEVWSNNLDD-FLDRRLNLPKK---EPDVEKLKAAVEn-gASEVRVVTYTQPYLITGVPKK 152 Archaeoglobus f...
WP_011018785  88 AIRAYAPTP-D-GY-R-CVTEAWAEIPEElEMDRVFTVPKDGEAGD-LDKIEELVDegiVEEIRVIVATQPKK-AGVPKK 161 Methanopyrus ka...
WP_010865582  87 AVRLYGYDP-NrGR-Y-SLGEAWAQPPPElELQRRISTLGSFDTDKMLKSLEERLDk--AEDVRLIAASQPKLAGGLSKK 161 Aeropyrum pernix
WP_011177441  84 SIRYYARGD-N-GL-E-VISEEWAENIDK-DVLRRIN---------KINRHKKGIEvkdVDDVRLMVHTNPQLVSGVPSK 149 Picrophilus tor...
WP_010916582  84 GIRLYDEDE-E-GNmV-VVYEKWTQNLDK-ELFKKITTFK---------EVKEKPVpetYADVRLIVATRNKDVPGIPSK 150 Thermoplasma vo...
WP_011008321  86 GFRLYTLDPtN-GY-KrAVAEVWASELPK-FLHRVLTLPEKLDVDKQLKKVEEFRDv--AVDVRALVATQPHL-SGIGKK 159 Pyrobaculum aer...
1S72_B       159 KPDVMETRVGG-G-SVSDRLDHALDIVedGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRR 236 Haloarcula mari...
WP_011498189 159 VPDVMETGVSG-S-DVKAKFEYAKTVL--GTMVEISDVFDNGKIVDVAAITTGHGTQGPVKRWGINLMKNKHSRQGSLRQ 234 Methanococcoide...
WP_011449216 159 VPDLMETRIDG-G-SMTERFEYGLSML--GKDFDIRSLFKVGQYTDVTAITKGKGTQGPVKRWGVHLRKRKHSRGKKERH 234 Methanospirillu...
WP_011021101 159 VPDIMESGISA-R-DLGTKFEYSKTIL--GTLVSVTDVFKNGTLVDTAAITIGKGTQGPVKRWGIQLMKGKHSRQGSLRQ 234 Methanosarcina ...
WP_010879418 153 VPDVMEHRIGG-N--VEEALDYAISKL--GKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITLDAKHARSSKHRR 227 Archaeoglobus f...
WP_011018785 162 KPDVMEYRIGG-K-DVRERFEYAVEIL--SEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQKGRH 237 Methanopyrus ka...
WP_010865582 162 KPDLLEIKVGGvS-DVTKLFDYAKDVL--GNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSRR 238 Aeropyrum pernix
WP_011177441 150 TPEIFEIRIGG-S-TIENRIKYAKERL--GSNISFSDFSKPGNFVDVIAVTKGKGFQGVVKRFGVKLLPRKNRKHR--RM 223 Picrophilus tor...
WP_010916582 151 KPEIFELRIGG-GnSVKERFEYATAHL--GKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPRKNRKHR--RM 225 Thermoplasma vo...
WP_011008321 160 TPELLEIPIGGvP-SVDERINFAISLL--GKTVSPKDVFTPGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRR 236 Pyrobaculum aer...
1S72_B       237 IGNLGpwNPSRVRSTVPQQGQTGYHQRTELNKRLIDI--G--E-GDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVR 311 Haloarcula mari...
WP_011498189 235 VGTLGpwTPAHVSWRVPQAGQMGYHQRTDYNKRILKM--S--SdVDEVNPAGGFVNYGLVRGNYILIKGSVPGPSKRLIR 310 Methanococcoide...
WP_011449216 235 VGTLGpwTPHHVRWQVPMMGQMGYHQRTEFNKRLLKI--G--EdGAEITPEGGFINYGEVRARYVLIKGSVPGPSKRLVR 310 Methanospirillu...
WP_011021101 235 VGTLGafNPSRVSWRVPQMGQMGYHQRTEFNKRILKI--G--SdGEEVTPEGGFINYGLVRGDYILIKGSVPGPSKRLIR 310 Methanosarcina ...
WP_010879418 228 VGNLGpwNPHHVRWTVPQAGQMGFHQRTEYNKRLIKI--G--EnGEEITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIR 303 Archaeoglobus f...
WP_011018785 238 IGSIGpiTPSRVRWTVPMAGQVGYHQRTEHNKRILKI--G--EdGEEVTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIR 313 Methanopyrus ka...
WP_010865582 239 IGARS--HGRSTFWETPQAGQTGFHRRTEYNKRILMI--D--DdGYKVTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIV 312 Aeropyrum pernix
WP_011177441 224 IGTLGpwHPDWVRNTVPQAGQVGFHQRTIHNIRIIKF--DtkDhVDDINVKGGFLNYGIVRNDYVLLFGSVPGPAKRLIK 301 Picrophilus tor...
WP_010916582 226 IGTLGpwHPDWVRNTVPQAGQMGYQQRTISNVRVLKYskG--EdADTINVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIK 303 Thermoplasma vo...
WP_011008321 237 TGTIGpqAPA-VMFTQPRPGQMGFHQRTEYNKRLLKI--G--EnGAEITPKSGFPHYGVVKGPYILIQGSVPGARKRLVV 311 Pyrobaculum aer...
1S72_B       312 FRPAVRPN----D--QPRLDPEVRYVSNESN 336 Haloarcula marismortui
WP_011498189 311 LREPTRSK----V--SSIGEPQIMHVSTQTL 335 Methanococcoides burtonii
WP_011449216 311 IRHAMRLG----E--HKIREPTIGFISLESK 335 Methanospirillum hungatei
WP_011021101 311 LRDPIRAK----K--ADLGEPNILYISRESK 335 Methanosarcina acetivorans
WP_010879418 304 MRDAIRPP----K--AHFDGVNIVYVSTTSK 328 Archaeoglobus fulgidus
WP_011018785 314 VRPAVRPP----Kn-APEGAPEILYISRTSQ 339 Methanopyrus kandleri
WP_010865582 313 MRWAIRPPewylK--LGVRKPEITYISLASK 341 Aeropyrum pernix
WP_011177441 302 MRDPARQT----R--PAVESIEVTYVSRESK 326 Picrophilus torridus
WP_010916582 304 MRDPARQK----V--PDIDNVKLDYISLESK 328 Thermoplasma volcanium
WP_011008321 312 LRHPVRPP----RkaPPAAEPQVVWVSSQTL 338 Pyrobaculum aerophilum
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap