Conserved Protein Domain Family
phage_DnaB

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TIGR03600: phage_DnaB 
phage replicative helicase, DnaB family, HK022 subfamily
Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions]
Statistics
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PSSM-Id: 274672
Aligned: 7 rows
Threshold Bit Score: 556.632
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011253833  22 NLACEQCLLGSVLIDSKTt--LEAVEEILRPEHFSDPINAQIYEKALLIYNEGRKVDPLTIMRHFmhPDEMVWGKVDPKE 99  Gluconobacter o...
WP_000131484  11 SIEAEQAVIGGLLLDDDSserVQKVLAMLKPDSFYSRPHKIIFEEITRMHREQKPVDGLTLFDEL--ERKSLTASVGGFA 88  Enterobacteriaceae
WP_003689132  15 SVGAEQNILGGILIEPTA---IARC-AILTPEKFYQAQHRIIFRALLDMAAANEPIDIITLNDKL--EARGEAENAGGLA 88  Neisseria gonor...
WP_011590798   6 AIDSEKAILGTIIQDNDF---MIKAMGSLEDNDFYSSKNKITYRAMRELFKDNISFDLTIVAEKL--SKEIKAQAI-TLS 79  Clostridium per...
WP_010954719   9 AEEAEFGVIGSLMHQPSL---IETIGAKISPMHFHQQDAAELFSMILAARSAGRPADPVSLADIR--PTLSNGEMT--LV 81  Pseudomonas putida
WP_011254736  19 SIPAEQGLIGGLLLDNQF---FDRVIDVVKVQHFYDQAHRLIYQAMFDLYAQNKAVDLITVADSL--AAKGTLEQAGGFA 93  Aromatoleum aro...
WP_011312580  12 SVDAEQAVLGGLLLDNGA---WDRIADLLTPADFYLADHRLMFETMRDMFERGEPVDVVTLAARI--EARGEAQKV-GLG 85  Thiobacillus de...
WP_011253833 100 YFAKLLNAYVSTRTALDYAREIRDAAMRRELMALCQQTSDLCCRPEDQRAEDIVEGHESALMHIAmgMSDSQPN--VTFH 177 Gluconobacter o...
WP_000131484  89 YIAEIAKNTPSAANIVAYAMQVRETAMERYAINRMTEATELLYSRNGMTATQKYEAIQAIFTQLTdhAKTGSRRglRSFG 168 Enterobacteriaceae
WP_003689132  89 YLIDLNQNTPSAKNISRYVGIVNDRFVERGLLKASAAIEKIAVSKDGGTVAEKLSKAADELAAAG---KDAVKRetKTFG 165 Neisseria gonor...
WP_011590798  80 DLTEISYHT-SRGTFDSHLNLVKEKSKERKLIVACKSIIT-----DGGSIESKVDLLQNTLLELN---SSDREDkfYTMS 150 Clostridium per...
WP_010954719  82 RAAEIMRNTVSVANANEYARIVVERSKARVVNDLGQTIINLA--SQARPIAQIIAEVQEAALSLN---SEDDEPdvITLA 156 Pseudomonas putida
WP_011254736  94 YLAEVANGAISTAAISSYAKIIRSKAVLRHLGAACNRILQTIHDPGTKKAEEILDEAEALMLRVTg-KIIGQEDgpVPAR 172 Aromatoleum aro...
WP_011312580  86 YVATLSTQTPSAANIVRYAGIVTEKRARRDLLAAGHRIAGMASTDGG-DAGDAIQEAQALVMALTegRSAGSEP--QAVD 162 Thiobacillus de...
WP_011253833 178 EALCNAVLSAREAVERGSALAGLSWGYRSLDRLTN--GLVGGNMYVLGARPAMGKTSIGLGIALRVA-SAGKRCLFWSGE 254 Gluconobacter o...
WP_000131484 169 EVMEDWVSDLEKRFDPSGEQRGMSTGIPSLDRMLSpkGLVKGSLFVIGARPKMGKTTLYSQMAINCAvHEKKPALMFSLE 248 Enterobacteriaceae
WP_003689132 166 QTVEDLIGGLDKRLD--GVRFGLPTGLMKLDGMTG--GLPDGNLIVIAARPSMGKTVLAENIA-RFAlKQGKAVHFQSYE 240 Neisseria gonor...
WP_011590798 151 EVMEKTLNKIEKAFNNKSGLTGISTGIQKIDNATN--GLEKKDFIVFGARPSMGKTALSLSIMENI---KGK-VLYIQLD 224 Clostridium per...
WP_010954719 157 EALGPVIDEMDDRFNGRG-INGLSTGLPDLDDLIQ--GLRGSHVIIVAGRPGTGKTTLGLGIAEYLTiRESKSALVFSLE 233 Pseudomonas putida
WP_011254736 173 DFVGAVFRDATAVPSPNG-LQGLSTGLSGLDQITL--GLCPADFIVIGARPSHGKTTLALNIAEEVGlRRGLPVLIFSPE 249 Aromatoleum aro...
WP_011312580 163 DLLPAVLRSIDERFHKAGEFSGVASGYGDLDRLTC--GLQPGDLVIVAGRPSMGKTTLAVNIAENVA-ADGGVALVFSLE 239 Thiobacillus de...
WP_011253833 255 MTAEQVGARGGAAKSGLNLRSVFSGRRWDVpeeaatgqqpplegwE----------WNALQGACDEAQKLPL-EIDTRGG 323 Gluconobacter o...
WP_000131484 249 MPGDQILEKLVGQKSGVNPNIFYLPATNDA---------------DdgyqgdydgdFNRAIETANRLSEIDLlYIDDTPG 313 Enterobacteriaceae
WP_003689132 241 MSAVELARRGMAAECNIPMQNLKTGNLTQS---------------D----------YANMPIYVSQAKEWKFdVNCDL-- 293 Neisseria gonor...
WP_011590798 225 MSTEGMGQRLLASNTCIENGKIARGRFNDS---------------E----------MNSLLNVFDRLSRKNNiFVYEPAS 279 Clostridium per...
WP_010954719 234 MAGKELAKRSLASASSVTTGNIDTGKAMAD---------------Ge--------kIQKITAAVGRMRDADL-RICQKGG 289 Pseudomonas putida
WP_011254736 250 MPKEQLSLRMLSSMSGIKHSTLRTRNISAV---------------E----------KDVFASSLAKLSAAPI-YIDDSAR 303 Aromatoleum aro...
WP_011312580 240 MGARQLVERSVCRFGGISTTAVRNGDMRQE---------------D----------FERLLVAHKRLQGKRL-VIDDTPS 293 Thiobacillus de...
WP_011253833 324 LTVAQLRSRARRMKRSKRGLDAIVLDYFQLMRgSprvRGRMRY-EEMTEISNELKILAKELDVPIIVLAQLNRESEKREN 402 Gluconobacter o...
WP_000131484 314 LSLAQIVSESRRIKREKGCVGMILVDYLTLMT-A---EKADRNdLAYGMITKGLKNLAKELDCVVVLLTQLNRALESRTN 389 Enterobacteriaceae
WP_003689132 294 LNVDELCFLAKEKKLTT-GLDLLVVDHLHIMPrA----GRDEV-AELGNISRRLKNLAAELNIPVVLVAQLNRGNTKQAD 367 Neisseria gonor...
WP_011590798 280 ITVNQIRLIAKEIQIKY-GLDVIIVDHIGKIRpT---TKGSKY-EQSSYISNSLKAMAKELNVAMVALCQLSRASEQRAD 354 Clostridium per...
WP_010954719 290 LPLSRIRNIAR-FQHKAKPLDLIVIDYIGLIApEpgsRQQNRN-LELGAISRGIKAMAKELDVPVIVLAQLNRGIETRTA 367 Pseudomonas putida
WP_011254736 304 LDANALRARARRTAKRAGSLALVIVDYIQLMAtAdevDNATRN-LEVQGISRSIKALAKELNVPVIAVSQLNRSVDRRSN 382 Aromatoleum aro...
WP_011312580 294 TSPARMRAKARKVKHRYGRLDLVVIDYLQLMAg----DGNTRS-EQLGGLTRALKLMARELGAPVVLLSQLNRGLEQRTD 368 Thiobacillus de...
WP_011253833 403 KRPAMSDLRDTGALEQDADVIGLIHREHYYLQKEASa-GglvkrdketrdsfdarcqefqerldaargKG----DVFLVK 477 Gluconobacter o...
WP_000131484 390 KRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSVPP--G-----------------------------ET----ELILRL 434 Enterobacteriaceae
WP_003689132 368 KRPNMADIRGSGAIEQDANIIIMPHRESYYDGNENP--S-----------------------------IA----ELIIAK 412 Neisseria gonor...
WP_011590798 355 HRPILSDLRDTGSIEEDADVIGLLYRDGYYRAREDKe-D-----------------------------IVddvlEINFAK 404 Clostridium per...
WP_010954719 368 KKPQMSDLRDSGEIEQDADIILIAHRDADSDLGQS---G-----------------------------VT----EIDVVK 411 Pseudomonas putida
WP_011254736 383 QRPILSDLRDSGSIEQDADVIIFLYREGATKSEEQSaeS-----------------------------EA----ELIVAK 429 Aromatoleum aro...
WP_011312580 369 KRPVLSDLRESGAIEQDADVVLMVHRPDYYDADSPHt-G-----------------------------LA----EVLIRK 414 Thiobacillus de...
WP_011253833 478 NRHGPEGRCRMLF 490 Gluconobacter oxydans
WP_000131484 435 NRHGNTGTVYCIQ 447 Enterobacteriaceae
WP_003689132 413 NRDGETGTVVCGW 425 Neisseria gonorrhoeae
WP_011590798 405 CRNGRTGVVELNY 417 Clostridium perfringens
WP_010954719 412 HRHAPVGHCLLQH 424 Pseudomonas putida
WP_011254736 430 QRNGPIGSVKVLF 442 Aromatoleum aromaticum
WP_011312580 415 QRMGPLGTVTLCF 427 Thiobacillus denitrificans
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