Conserved Protein Domain Family
yidC_nterm

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TIGR03593: yidC_nterm 
membrane protein insertase, YidC/Oxa1 family, N-terminal domain
Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system. [Protein fate, Protein and peptide secretion and trafficking]
Statistics
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PSSM-Id: 274666
Aligned: 84 rows
Threshold Bit Score: 155.567
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_004930076   4 WARFAILGAMFVTAYLLILAWQKDyghantA---V---QPQAAAVvshdvsAdlPN-----SQSTAAASS----DVpqaN 68  Acinetobacter
WP_010938376   3 NKRAIIAVVLSFIVLVGWGYLSEYmgw-tpK---S---VPATEQKtaasapA--PS-----VVTSAPEAV----TPapaF 64  Desulfovibrio v...
WP_011527153   3 DKRIVLAIILSLVVFLGWHSFAEYmgwispK-------VQHVANErhssvdQ--TA-----TSNIALDSV----QSvfsP 64  Lawsonia intrac...
WP_011368264   3 NKRPIIAVVLSLFVLIGWSYLSEFmgw-tpA---P---APVEQNAtavqqkA--SE-----PVAQPVQTA----SApaaS 64  Desulfovibrio a...
WP_010931700   2 DRNSVIGFALIAAIMIVWLQFMKPeqklglE---K---AAASREAvqktpaA--AL-----PAPSAAVAAaaraDSlgsF 68  Chlorobaculum t...
WP_011358841   2 DRNSVTGLALIALIMIVWLQFMSPekkplqQvtdA---GKARTEQvaaeinS--DM-----QPAAVPATE----DSfgmF 67  Pelodictyon lut...
WP_011363038   2 DKNSVTGLALIAVIMLVWLQFM-TpaqkvqP---P---QQVATTEqqvasaS--LP-----LPAALSPST----DTfglF 63  Chlorobium chlo...
WP_015897217  16 SRTLLIYAVIFLAIFLGLQYFRSKnappapP---NgkhTPAAQKNspapsaA--PA-----SAPGQTASG----NApaaA 81  Acidobacterium ...
WP_011682862  23 evRLLLAFILMGAVMFLTPYIFPTpkppakK---D---AATTAAVtpspaaA--DAsnpaaTAPSGPAVV----EAgslP 90  Candidatus Soli...
WP_011585920   2 DKNQIIGISLISVLMLGYFGFMSTqtpetpV---T---TPPAITQpvqsdtV--LL-----KSAATDTAL----KAqnqR 64  Cytophaga hutch...
WP_004930076  69 IAAQqtpaatSTAAS---QQLISIQTDLYHLWINPKGGDIVRIELLNHDQSKNSdqPFVM-LESD--A-KRTYVAQSGLI 141 Acinetobacter
WP_010938376  65 SPST--------------GHEVTVTTPLYKAVLHSGGGVLRQFMLSRYHMGIDRdaAPVN-LIESs-A-IR--VAPLGLL 125 Desulfovibrio v...
WP_011527153  65 -------------PT---GKDVYIETPLYIAKIHSSGGILSSFILKKYKVNLDNtsPLVN-LVSPe-A-SQAMPLGITLN 125 Lawsonia intrac...
WP_011368264  65 SFAP------TEGR------EVKVDTPLYTAVFQSQGGVLKHFRLKKYTESIEEgaPLVE-LVTPe-A-AGKAPMGLLLN 129 Desulfovibrio a...
WP_010931700  69 AQAS------VGTE-----KTITVSNDLFTATLSSKGATLKSLVLKKHLDGNRKpfNLISaSDKGa-L-SMLFLSSDGKK 135 Chlorobaculum t...
WP_011358841  68 APAA------SGTER-----LTVIDNDLFHAVVSSKGATLKSLVLKKHLDGNLKpfDLVS-DAKNg-AlSMLFLTREGRR 134 Pelodictyon lut...
WP_011363038  64 ATAS------QGSE-----QVTVVENDLFRATLSSKGATLKSLVLKKHLDGHLQpfDLLG-KQKNghL-SLLFLTKDGKR 130 Chlorobium chlo...
WP_015897217  82 TTPA------VLAAA---ETTTTVESPLYRVTFTNRGGVAKSWILKKY--TNDAqnRPLD-MVNDk-A-AQQFGYPLSLY 147 Acidobacterium ...
WP_011682862  91 ADAT------QQKPE---PA-FVINTDLYRVVLSNQGATVRSWQLKRYK---GNdsKPLD-LVNSv-S-GLDFPFSLYFP 154 Candidatus Soli...
WP_011585920  65 EYGD------FAAAMvgeAKEYKLENKDVVVTLSTKGGTIKSVLLKNYFTWDKK--QLFL-FKQEn-N-QLSLILNTNKK 133 Cytophaga hutch...
WP_004930076 142 GLNGPDSSr--GGRP-VFDVEKSAYTLTDaketkdkdgklvKT-LTVPMVYKtT-DG-VEIIKRFTFKQGDYPIVVSYQV 215 Acinetobacter
WP_010938376 126 -----VNGq-pSWNTgQWAFEGGDLNLAD------------GQ-TGTLRFVGsV-DG-LRVVRELEFHADSYLVTEKLHL 184 Desulfovibrio v...
WP_011527153 126 GQPSWSNGn--------WSFLGGDLYLKP------------GE-TKELTFVGiV-NG-VKIIRIFTFNADSYLIHEKLQL 182 Lawsonia intrac...
WP_011368264 130 GQPTWKLAa--------WQFEGDDLKLDG------------SG-KGELVFVGeM-DG-VRFERTLSFDPETYLISEKVRL 186 Desulfovibrio a...
WP_010931700 136 IDTRDLYFrslDAKT-TETVTGKE------------------K-LSVSYVLDvD-AT-RSIQITYTFTGDSYVVDYDLKL 193 Chlorobaculum t...
WP_011358841 135 IDTRDLYFa-gSSLD-TLHTIKGKETYA------------------LSYRLAlS-PR-QSIEVSYTFTGDSYRIGYDVKL 192 Pelodictyon lut...
WP_011363038 131 IDTRDLYFr-nVTLE-T------KRTISG------------QErYTVRYRLDvA-PQ-KAIEIAYLFSGESYAIDYDVKL 188 Chlorobium chlo...
WP_015897217 148 TYDAALTQq-lNQAM-YVPSATGTI-----------------Q-APATLTFRySaNG-LTVEKTFRFEK-SYVLETDVKV 205 Acidobacterium ...
WP_011682862 155 GQKPASNVn-wTWYK-Q--------TGDA------------DG-LGV--TYEyS-DGhVVVRKVVRFQKDSYLSMVSCEV 208 Candidatus Soli...
WP_011585920 134 PVDLYSLYy-aGVES-K----------AG------------DK-QVVTFKTDaG-NG-KTIEHTYTLGAAGFTVDYNLKA 186 Cytophaga hutch...
WP_004930076 216 VNRSPQNWQGQMFGQIKRDNSEDpgksdQGI----FTLGTFLGGAWGTPEEHYNKLKFANFSDEKLNVEAKGG--WVAMV 289 Acinetobacter
WP_010938376 185 APEGDAPRTARVGFTLGTTSLTPg---eSQY----NLTR----VAWFADGSFSEKSSTGDLEKGVL---IDGSidWAGVM 250 Desulfovibrio v...
WP_011527153 183 ASEKQNSCPTKVGLLVAATp-------fGTG----QYDPTRMAWSIKDSFK--EETSIDTLKEK--GIQESGEfnWGGVM 247 Lawsonia intrac...
WP_011368264 187 TDTAGVSRDVRLGMTLSTTSLSPe---gGAY----NL--TRM--AWYQD-GFHQETSADDLRETGVKVDE--GvnWGGVM 252 Desulfovibrio a...
WP_010931700 194 NGFGSSIAGNEYQLDWDGGLNYSe---kDQV----DESHNAIASAY--LGGSVVKLDAKDAKKT-WQDEESGKaqWVAVR 263 Chlorobaculum t...
WP_011358841 193 TGLSGSLAGNEYQVQWDGGLPYTe---kNRD----DEARSAQASAY--LGGSLVKLDAEK-DGRSYREEQSGDarWVAVR 262 Pelodictyon lut...
WP_011363038 189 IGFGNDIAGNEYQVQWDGGLAYTe---kNRE----EESQNALAGAY--LGGSLVKLDAAK-EKEVFREEQSGEatWVGVR 258 Chlorobium chlo...
WP_015897217 206 TRNGAPVTALLAWPSGFGDQETLp---qYQNaqidQETGAKTGFHLA-GGPNVKQIEPKKVS---GGDTVQGPldYAGVS 278 Acidobacterium ...
WP_011682862 209 TLDGKPIPHLLQWRGGFGDLTLTn---aAAG----QRT---LYFDLTTN--KLVEQNPKAAAK--GPITSEGTfsFAGIA 274 Candidatus Soli...
WP_011585920 187 AGFGGELPNLPLTLDWREQVERIey--dSEQ----ARVKSTVNYMAAEDGF-----DYLSEASKDRETETLSNvyWVSLK 255 Cytophaga hutch...
WP_004930076 290 QHYFVSAWIPGHf---------gDQ-----AYTaKLESRKSADNMNIIGFTSPTINVPAG-K-T-MTVDATFYSGPKIQS 352 Acinetobacter
WP_010938376 251 SNYFLAAVAPK-------------------DTR-AVLKGKLEGGVYRVAVERPDQMVNPG-N-S-DVIVCNYWFGPKERD 307 Desulfovibrio v...
WP_011527153 248 SNYFMNVV---Al---------sDP-----LYL-TIKGRI-QNDVWRVALERSNVLIPAE-G-T-TSITVNWWFGPKDRE 305 Lawsonia intrac...
WP_011368264 253 CNYFMAVMAPAEg-------------------A-LPFKGVLEGGVYRSVVENSSLSIASG-S-S-AEFGIGYYIGPKESD 309 Desulfovibrio a...
WP_010931700 264 NKYFVAAIMPQRt---------tDG-------I-YLHGTKKDGSDFKNYVAALKMSFPAGqQ-S-VDDHYRLYVGPLDYN 324 Chlorobaculum t...
WP_011358841 263 NKYFIAALIPED-----------RT-----AGF-YLDGQKERGNAYENYLASLKMEVPAS-E-EvVDSRFSLYLGPLDYN 323 Pelodictyon lut...
WP_011363038 259 NKYFTAALIPQSk---------sNG-------I-YLEGKREAGNHFENYLAALKMSLPAS-A-TeVHNTFTMYVGPLDYN 319 Chlorobium chlo...
WP_015897217 279 DLYFASIFLPPNp---------dNAlmvtlHHA-LELPRDPAHPKTSKMDQVPVLGAAVG-StT-GEVHDRLFVGPKALD 346 Acidobacterium ...
WP_011682862 275 DTYFAAVFLPEGn---------gR------MQQ-VTFADTVRTPTSETPLPLSGVAVGDG-P-P---IRFELFVGPKDVD 333 Candidatus Soli...
WP_011585920 256 QKFFNSGFYIREggtipsatvtaYP-----MYS-TLPNAPVNSEKFIKALEAQVQLPLEA-ViS-GKAAYAFYFGPNDFK 327 Cytophaga hutch...
WP_004930076 353 ELKDL-AV----GLNQTVDYGWLWPIAKLLFIGLQFFHNIV 388 Acinetobacter
WP_010938376 308 LLNAA-PN----NLGKAIDLGWFGFIARPLVTLLDFFYKYV 343 Desulfovibrio vulgaris
WP_011527153 306 LLSRA-PD----KLENAIDFGMFSIIAKPLLTALTFFYEYT 341 Lawsonia intracellularis
WP_011368264 310 RLAAM-PY----HLDEALNYGWFTFLAKPLVSGLKFFYSYA 345 Desulfovibrio alaskensis
WP_010931700 325 TVKSL-NA----DLEKIMDFGWDWLTRPFAEYLILPIFNWM 360 Chlorobaculum tepidum
WP_011358841 324 TVKAQ-HA----DIEKIMDFGWDWLTRPFAEFVILPAFTWM 359 Pelodictyon luteolum
WP_011363038 320 TVKAQ-GV----GLEKIMDFGWDWLTRPFAEWMILPVFNWL 355 Chlorobium chlorochromatii
WP_015897217 347 VLKSI-HTayhfNLEGIVHYGFWGWIAKPMFLVLQFFHNHg 386 Acidobacterium capsulatum
WP_011682862 334 MLRKI-NP----KLEQVVDFGWLSVLAKPLFLIVNYVNDtl 369 Candidatus Solibacter usitatus
WP_011585920 328 ICKAVpAE----NYQKNVNLGWPLVSWINRFVVIPVFDGLK 364 Cytophaga hutchinsonii
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