Conserved Protein Domain Family
polynuc_phos

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TIGR03591: polynuc_phos 
polyribonucleotide nucleotidyltransferase
Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family). [Transcription, Degradation of RNA]
Statistics
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PSSM-Id: 274664
Aligned: 59 rows
Threshold Bit Score: 1019.74
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011728507  21 SFGTRT-IRFETGRLAQQAAGSAVAYLDDETMLLSATTASkNPKDHFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTD 99  Mycobacterium s...
WP_011522797  12 ftGGKS-LSFETGKLAKQAHGSAIVRSGQSVVLATACANA-DPREGIDFFPLTVDYREYTYAGGRFPGGFIKREGRPSEK 89  Candidatus Kori...
WP_011015777  14 ELAGRT-LKVSTGKISRQSSGAIVIQYGDTVLLSTANRSK-EARKGADFFPLTVDYIEKFYSSGKFPGGFNKREGRPSTN 91  Fusobacterium n...
WP_002682350   8 KIGEHD-LILETGYLAKQANGSIYAEYAGSAILATICASG-QAQEGLDYVPLTVDYNEKYYAAGKIPGGFIKREGRPKDK 85  Treponema denti...
WP_011689368   8 DLGDRK-ITLETGKMAKQANGAVVVRSGDAVVLVTACMAD-QPKPSAGFFPLTVDYREYTYAAGKIPGGFIKREGRLSEK 85  Candidatus Soli...
WP_011175193  14 PVG-AQeIIFETGKIARQAGGAVVVRCGETVVFTTACAAPn-ADSTTDFLPLRVDYQEKFSSAGKTLGGFIKREGRPTEK 91  Candidatus Prot...
Q2S1P1        12 FVPDRS-LSLETGRIAKQADGSVVARLGDTMVLSTATLS--DSVNESNFFPLTVDYREKFAAGGKVPGGFIKREGRPTDK 88  Salinibacter ru...
WP_011585170  15 LPDGRE-IQIETGKLAKQADGSAVVKLGNAMILATVVSAK-EAKPGVDFMPLSVDYQEKFASNGKIPGGFLKRESRLSDY 92  Cytophaga hutch...
WP_005791373  11 LGDGRT-ITLETGKLAKQADGSVMLRMGNTMLLATVCAAK-DAVPGTDFMPLQVEYKEKFAAFGRFPGGFTKREGRASDY 88  Bacteroides
WP_000149893   8 QYGRDT-IVLETGSWAKQAHGAVVYKSGNLVLLATVCAAD-EAKEGQDFFPLTCEYTEKLYSVGRFPGGYFKREAKPPEH 85  Leptospira inte...
WP_011728507 100 AILTCRLIDRPLRPSFVDGLRNEIQVVVTVMSLDPKDLYDVLAINAASMSTQLAGLPFSGPVGGARIALIDGTWVAFPTV 179 Mycobacterium s...
WP_011522797  90 EILTSRQIDRPIRPLFPEGFRCETQVIAMVLSADSENDPDVCGINGASAALAVSDIPFNGPIGAVRVGLIEGQNIVNPTY 169 Candidatus Kori...
WP_011015777  92 ATLVARLIDRPIRPMFPDGFNYDVHIVNTVLSYDEINIPDYLGVIGSSLALMISDIPFLGPVASVIVGYKNGEFILNPSP 171 Fusobacterium n...
WP_002682350  86 EILVSRLIDRPMRPLFNKEFGREIQLVPTCISTDMINPPDILAVIASSAAVHISDIPFDGPVAAARVAYKNGEYIINPTF 165 Treponema denti...
WP_011689368  86 EVLTCRLIDRPIRPLFPEGFMNETQIIAMVLSADPEQDPNSLAIVGTAAALAISDIPFQYVMAGVRVGMRDGQYTANPTY 165 Candidatus Soli...
WP_011175193  92 EVLVSRLIDRPIRPMFEEGYYNEVQLLSFVWSYDGINSPEPLAICGASAALVISDIPLIKPVGAVRIGFIDAQFIVNPTI 171 Candidatus Prot...
Q2S1P1        89 ETLTSRLIDRAIRPLFPDGFYHDVHVVNFVISAGQDFDADVIAGVGSSAALMLSGAPFAGPFAEVRVGRVDGDYIVNPTM 168 Salinibacter ru...
WP_011585170  93 EILISRLVDRAMRPLFPEDFHADTQVAITLISADADVLPDALACLAAQAAMSVSDIPFNGPVSEVRVISLNGEFIINPKP 172 Cytophaga hutch...
WP_005791373  89 EILTCRLVDRALRPLFPDNYHAEVYVNIILFSADGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARIDGKFVINPTF 168 Bacteroides
WP_000149893  86 EILISRIIDRPIRPLFPEGYFCEVQLQVQVLSADGDVSVAGHALNAASAALAVSDIPFNGPIAGARIGRVNGELILNPTT 165 Leptospira inte...
WP_011728507 180 EQLERAVFDMVVAGRIVgdgdsadvAIMMVEAEATENVVELVAGgAQAPTEAVVAEGLEAAKPFIKALCA-AQQELADRA 258 Mycobacterium s...
WP_011522797 170 DEMRASKLNIMVVGTAE--------GIVMIESGAHEATEEEVVS-AIEFGHGEIKKICAVISKLAKEVGK-TKRTVAPVE 239 Candidatus Kori...
WP_011015777 172 KELEESELDLIVAGTKE--------AVNMVEAGAKELDEETMLK-AIMFAHENIKKICEFQEEFSKLYGK-ENIEFEKPE 241 Fusobacterium n...
WP_002682350 166 SQIETADMEIVVAGTKE--------GITMVEGGANEVSEEVMLT-ALEKAHEMIKSLCKMQEDLRELAGK-EKLPLVPLE 235 Treponema denti...
WP_011689368 166 TEGRASKLNIVVAGTEE--------GIVMVEAGAQEVSEAEVLG-AIEFGHECCKKIAAGIRQLMKLCGK-TKREFVSPV 235 Candidatus Soli...
WP_011175193 172 EQQKQSKLDLLIAGTEE--------AVLMIEGFCDFLTEDQVLE-AIEIGHRSIKTICQTLEQWRAKVGKpKNRETLRQ- 241 Candidatus Prot...
Q2S1P1       169 QQTEESDIDLVVAGKED--------ALVMVEGEAEEISEESMIE-ALDVAHRSIRRLCEGQHRLVEQAGEpDPFEWEADR 239 Salinibacter ru...
WP_011585170 173 AQIEKAELELIVAASYD--------NVIMVEGEMSEVSEELMLN-AIKVAHDAIRTQCIVLKELESAAGKtEKRTYSHEV 243 Cytophaga hutch...
WP_005791373 169 DQLEQADMDIMVAATYE--------NIMMVEGEMSEVSEAELLE-AMKVAHEAIKVHCKAQMELTEMVGKtVKREYCHEE 239 Bacteroides
WP_000149893 166 KEILNSDLDLVVAGTKT--------HIVMIEGEAKELSNEEMIA-ALRFAQKHIAEFVTLQEEYAKKIGV-VKREVKLKV 235 Leptospira inte...
WP_011728507 259 AKPAGEYPVFPDYEAdVYDAVASVAt-E--ALAEALTIAGKTERNDRTDeik-----veVLErlaepYAGREKEIGAAFR 330 Mycobacterium s...
WP_011522797 240 LDQPYLDGLRKKIGa-DLADALNTE--KypKSESYAKVKEIKSKLKEEIpad-----ddAA----------LKKLGKYYE 301 Candidatus Kori...
WP_011015777 242 VLTLVKDFIDTNGYE-RLQQAVLTT--G--KKNREDAVDSLEEELMEKFiqenypdvpeEEL-----PEDIILEFKTYYH 311 Fusobacterium n...
WP_002682350 236 AELENKQAIYDEAFPrLSKTLYL-S--T--KMERREESDKVKKELAEKYaeq-----leDE--------IQLKLFNALFE 297 Treponema denti...
WP_011689368 236 LDETIYAEVEKQARVd-LTDALNTEkhE--KLASYALVASVKKRTIEALpde-----qkEQG-------------AKCFD 294 Candidatus Soli...
WP_011175193 242 LPKELYADVESIANPlLEKALRICE-----KQKREEALAEVTKAVNDRLmpe------------neePKYPAKHIAYVIK 304 Candidatus Prot...
Q2S1P1       240 VPEQLVQRMREEYGPkVADHIH-GPy-S--KETFHGGIGDLKDQAVDDVlgda----------setpEGYTASDIRDAIG 305 Salinibacter ru...
WP_011585170 244 NDWDLKKKINDAVYQqVYEVAKLGNa-N--KNTRAEGFKAVKKAYIESLpadh---------------tedlTLIGKYYH 305 Cytophaga hutch...
WP_005791373 240 NDEELRKAVHDACYDkSYAIAASGNr-N--KHERQDAFDAIRDEFKAQFseee----------leekG----ALIDRYYH 302 Bacteroides
WP_000149893 236 RDEELLSKVKEYAFAkLTTANQ--Tp-D--KTARNKEISNVNKEVVEFFkdti----------edsdK---IKDIKAYLH 297 Leptospira inte...
WP_011728507 331 SLTKKLVRQRILTDHFRIDGRGITDIRALSAEVAVIPRAHGSALFERGETQILGVTTLDMIKMAQQIDSLG-PENTKRYM 409 Mycobacterium s...
WP_011522797 302 LLREDIFRQQVTKEKRRPDGRAFDQIRQIWIEVDVLPRTHGSAVFTRGETQALVTTTLGTGDDMQRMEGFE-GEAKKRFM 380 Candidatus Kori...
WP_011015777 312 DLMKKLVREAILYHKHRVDGRTTTEIRPLDAQINVLPIPHGSALFTRGETQSLAITTLGTKEDEQLIDDLE-KEYYKKFY 390 Fusobacterium n...
WP_002682350 298 EMEYNILRTNILDKGLRVDGRGTKDIRPITCEIGVLPRPHGSAVFTRGETQSLGVVTIGTVFDEQIYDDIE-GDRRENFI 376 Treponema denti...
WP_011689368 295 ALKERIFRDDMLKKHRRPDGREFDQIRQITIETGVLPRVHGSTLFTRGETQALVTVTLGTKDDEQRIELLEpGEASKRFM 374 Candidatus Soli...
WP_011175193 305 DVSSKMMRQMILNENVRSDGRTSTDIRFIDIEQSLLPrAHGSSLFTRGETQALAVCTLGGASMAQRFEDLE-GEGNNRFY 383 Candidatus Prot...
Q2S1P1       306 EVEKGEMRNMIVEEGKRIDGRDQTDVRDLWMEVGYLPrVHGSAIFTRGETQVLGSITLGTSDDVQPVDEVF-ADTDKSFY 384 Salinibacter ru...
WP_011585170 306 DVEKDAVRNLILDERKRLDGRSLEQIRPIWSEVGYLPsAHGSAIFTRGETQSLTTVTFGTRLDEQMIDSAM-FSGNNKLM 384 Cytophaga hutch...
WP_005791373 303 DVEKEAMRRCILDEGKRLDGRKTTEIRPIWCEVGYLPgPHGSAIFTRGETQSLTSVTLGTKLDEKIIDDVL-AHGKERFL 381 Bacteroides
WP_000149893 298 ELEYEIVREQVLTKGTRFDGRKLDEIRSISVEINPLPgPHGSAVFTRGQTQSLGVVTLGTGSDNQRYETLE-GQKEKSFM 376 Leptospira inte...
WP_011728507 410 HHYNFPPYSTGETGRVGSPKRREIGHGALAERALVPVLPSIEEFPYAIRQVSEALGSNGSTSMGSVCASTLALLNAGVPL 489 Mycobacterium s...
WP_011522797 381 LHYNFPPFSVGEVAFLRGAGRREIGHGALAERALSAVLPSEDKWPYAMRVVSDILESNGSSSMASICGGSLSLMDAGVPL 460 Candidatus Kori...
WP_011015777 391 LHYNFPPYSVGEVGRMGSPGRRELGHGSLAERALSYVIPTEEEFPYTIRVVSEITESNGSSSQASICGGSLSLMSAGVPI 470 Fusobacterium n...
WP_002682350 377 LHYNFPPFSVGEVGRLG-TGRREIGHGNLAHRSLYPMVPEREKFPYTVRVVSEVLESNGSSSMATVCSGTLSMLHAGVPM 455 Treponema denti...
WP_011689368 375 LHYNFPPFSVGEVGFMRGAGRREIGHGALAERALTALIPGEDKFPYTMRVVSDTLESNGSSSMAAICGGSLALMQAGVPM 454 Candidatus Soli...
WP_011175193 384 LQYSFPPYSVGEVGRVGAPGRREIGHGKLAERALMAVIPTKEQFPYTIRLESNITESNGSSSMATVCGGCLALMDAGVAI 463 Candidatus Prot...
Q2S1P1       385 LHYRFPPFSVGEASYLRGPKRREIGHSMLAERALRPVIPEQDEFPYTIRINADVMESNGSSSMASVCAGSLALMDAGVPI 464 Salinibacter ru...
WP_011585170 385 LHYNFPGFSTGEVKPNRGPGRREVGHGNLAYRAIKKVMPPEIENPYTIRIVSDILESNGSSSMATVCAGTLALMDAGIKI 464 Cytophaga hutch...
WP_005791373 382 LHYNFPPFSTGEAKAQRGVGRREIGHGNLAHRALKRMIP--EDYPYVVRVVSDILESNGSSSMATVCAGTLALMDAGVKI 459 Bacteroides
WP_000149893 377 LHYNFPAFSVGEVRRSSGPGRREIGHGNLAERALKLVLPKPDEFPYVIRVVSEILESNGSSSMASVCSGSLALMAAGVPI 456 Leptospira inte...
WP_011728507 490 KAPVAGIAMGLVSDDvDvdgkvekrYVALTDILGAEDAFGDMDFKVAGTKDFVTALQLDTKLDGIPSQVLAGALSQAKDA 569 Mycobacterium s...
WP_011522797 461 KAPVAGIAMGLVKEGdD--------YAILTDIAGAEDHYGDMDFKVAGTTQGITALQMDIKIGGITAQIMREALEQARRG 532 Candidatus Kori...
WP_011015777 471 KEHVAGIAMGLIKEGeE--------FTVLTDIMGLEDHLGDMDFKVAGTKSGITALQMDIKITGITEEIMRIALNQAHQA 542 Fusobacterium n...
WP_002682350 456 KKPVAGIAMGLITEGnDr-------YAILSDILGEEDHLGDMDFKVAGTADGITGFQMDIKIAGVSPEIMKNALAQAKEG 528 Treponema denti...
WP_011689368 455 TAHVGGVAMGLVMEG-Kd-------YAILTDIAGAEDHYGDMDFKVAGTRDGITGMQMDIKVPNITTAIMKEALEQARRG 526 Candidatus Soli...
WP_011175193 464 KRPVAGIAMGLILENe--------rFIILSDILGIEDALGDMDFKVTGDQNGITAFQMDIKVEGITIEIMRVALKQAKEG 535 Candidatus Prot...
Q2S1P1       465 EKPVAGIAMGLVQEDdE--------TTVLTDILGQEDHLGDMDFKLTGTRDGITACQMDMKIEGLSRDVMLKALKQSRDA 536 Salinibacter ru...
WP_011585170 465 KAPVSGIAMGLITDTkTg------rWAVLSDILGDEDHLGDMDFKVTGTEKGITACQMDIKVDGLSYDILSQALQQANRG 538 Cytophaga hutch...
WP_005791373 460 KKPVSGIAMGLIKNAgEe------kYAVLSDILGDEDHLGDMDFKVTGTKDGITATQMDIKVDGLSYEILERALNQAKEG 533 Bacteroides
WP_000149893 457 QGSVSGIAMGLFSDSsg-------kYAVLSDIAGLEDHFGDMDCKIAGTRKGITAFQMDLKVTGVSFDVLESVFEQAQRG 529 Leptospira inte...
WP_011728507 570 RLTILDVMAEAIDRP-DEMSPYAPRITTIKVPVDKIGEVIGPKGKMINSITEETGAQISIEDD---GTVFVGAADGLS-A 644 Mycobacterium s...
WP_011522797 533 RLFILDKMNEVIQSPrTELSEFAPRFYTLQIPTDKIRDLIGPGGKVIRGIVEATGVKIDVEDS---GKVNVASSDQEA-A 608 Candidatus Kori...
WP_011015777 543 RIQILELMNNTISKP-AELKSNVPRIQQITIPKDKIAALIGPGGKNIKGIIEQTGATVDITDD---GLVSVFAKDADT-L 617 Fusobacterium n...
WP_002682350 529 RMHILGIMNQCISAPnAELSQYAPRVEMMTIPEDKIGALIGPGGKNVKAISDKYNVTINTEND---GTVTIYSKDGTSdL 605 Treponema denti...
WP_011689368 527 RLFILDKMYEAMPQAnTAISQYAPRIYTLHIPTDKIRDVIGPGGKVIRGIIEQTGVKIDVEDD---GTIHVASADEAS-A 602 Candidatus Soli...
WP_011175193 536 RVHILNKMLAVCPTYkGEMSRYAPRIETIQIKPSKIAVVIGPGGKQIRAIIEQTGVQIDIDDT---GLVNIAAIDLVS-I 611 Candidatus Prot...
Q2S1P1       537 RHHILDRMEETIAEPrAELSSHAPRLTKLTIDPDRIGAVIGPGGKVVKSVQEETNTEITVEEEegvGIVTIAATNQRD-A 615 Salinibacter ru...
WP_011585170 539 RLHILSEMKKTLATPrEDLKPHAPRMIMIQIPKELIGAVIGPGGKIIQEIQKTSGATVNIEEKdnaGWVSIFSKDKTA-L 617 Cytophaga hutch...
WP_005791373 534 RMHILGKIEETISEPrTELKDHAPRIETMTIPKEFIGAVIGPGGKIIQGMQEETGATITIEEIdnvGRIEISGTNKKS-I 612 Bacteroides
WP_000149893 530 RFHILDIMEKHISKAsSTLAGTAPRIIVRNIPKDRIGELIGPGGKNVRGISELTGAELYIEDD---GKVTISGSNQES-A 605 Leptospira inte...
WP_011728507 645 QAAIDKINAIAnpQLPKVGERFLGTVVKTTDFGAFVSLLPGRDGLVHISKLGKGkRIAKVEDV-VKVGDKLRVEIADID- 722 Mycobacterium s...
WP_011522797 609 KKALKMIGDIT--ATAEVGKTYLGTVTRLADFGAFVEILPGTDGLLHISEVAEH-RIKDVKDE-LHEGDQVLVKVLAVD- 683 Candidatus Kori...
WP_011015777 618 EKTLKLVDSFV--REVEYNEVYEGRVVSIMKFGAFMEILPGKEGLLHISEISPE-RVEKVEDV-LSVGDVFKVRVISM-- 691 Fusobacterium n...
WP_002682350 606 KGAKSIVKGIT--SDPEVGMVYDGTVKKIMDFGAFVEILPGKEGLCHISKLSRS-RVEKVSDV-LKEGQEIPVKLLEID- 680 Treponema denti...
WP_011689368 603 NKAIQIISDLT--ATAEIGKTYLGKVVRLVDFGAFVEIFPGTDGLLHISEIAEN-RIKDVRDE-LKEGDQILVKCLAL-- 676 Candidatus Soli...
WP_011175193 612 EKAKAIIHGLT--AEIEIGRIYSGKAISIAPFGVFVEILPGKEGLCHISEFDVn-RINSLDEF-VKQGDMLMVKVLDIN- 686 Candidatus Prot...
Q2S1P1       616 EAAIERIKQIV--AVPEEGEDYVGTVKGIRDFGAFVEIMPEKTGLLHVSEIDYd-YVENVEDY-LEVGDKVKVHLLEVHd 691 Salinibacter ru...
WP_011585170 618 DSALSQIKGIV--TLPEVGEVYEGKVKSITAFGAFVEFLPGKDGLLHISEIKWe-RLDTMEGV-LEVGETVKVKLVEVDk 693 Cytophaga hutch...
WP_005791373 613 DDAIRLIKGIV--AVPEVGEVYKGKVRSIMPYGAFVEFLPGKDGLLHISEIDWk-RLETVEEAgIKEGDEIEVKLIDIDp 689 Bacteroides
WP_000149893 606 EKAAKMVDGFF--AEVEVGKIYEGKVKRIADFGAFVEILPGKEGLCHISKIDFk-RVNSVKDI-VKEGDIIRVKVLNVDk 681 Leptospira inte...
WP_011728507 723 NRGKISLVLVAE 734 Mycobacterium smegmatis
WP_011522797 684 -GNRIKLSRKAV 694 Candidatus Koribacter versatilis
WP_011015777 692 EGGKISLSKKKV 703 Fusobacterium nucleatum
WP_002682350 681 KLGRLNLSYVDA 692 Treponema denticola
WP_011689368 677 EGNKIKLSRKAV 688 Candidatus Solibacter usitatus
WP_011175193 687 ERGQIKLSRKAT 698 Candidatus Protochlamydia amoebophila
Q2S1P1       692 D-GKMRLTRKPF 702 Salinibacter ruber DSM 13855
WP_011585170 694 KTGKYRLSRKVL 705 Cytophaga hutchinsonii
WP_005791373 690 KTGKFKLSRKVL 701 Bacteroides
WP_000149893 682 T-GKIDLSRKDA 692 Leptospira interrogans
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