1TEZ


Conserved Protein Domain Family
photolyase_8HDF
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TIGR03556: photolyase_8HDF 
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deoxyribodipyrimidine photo-lyase, 8-HDF type
This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420. [DNA metabolism, DNA replication, recombination, and repair]
Links
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Statistics
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PSSM-Id: 274644
Aligned: 4 rows
Threshold Bit Score: 895.086
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1TEZ_A         2 APILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQH 81  Synechococcus e...
WP_011056280   2 SLRLFWHRRDLRLNDNLGLAAAYTRTPKVVGLFCFDPAILSASDIAAVRVAYLVGCLQALQEAYRRLGGSFLIFRGDPRQ 81  Thermosynechoco...
WP_011243704   3 APILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQH 82  Synechococcus e...
WP_011320971   3 DLVLFWHRRDLRITDNIGLATARQHSSKVVGVFCLDPNILERDDVAPVRVTYMIGSLQELQQRYVQAGSQLLILRGDPVQ 82  Anabaena variab...

1TEZ_A        82 LIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQL-WDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPK 160 Synechococcus e...
WP_011056280  82 ILPQVAKGLGAVAVHWHEDVEPYGRERDRAVAAALKEKGIAVETA-WDQLLHPPEAIQTKQGQPYTVYSPFWRNWSSLAK 160 Thermosynechoco...
WP_011243704  83 LIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQL-WDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQPK 161 Synechococcus e...
WP_011320971  83 AIPHLAEALNAKAVFWNWDVEPYSQTRDRAIIATLKDKGIQCLTHnWDQILHSPDEIRSGSNTPYTVYTPFWKNWSSKPK 162 Anabaena variab...

1TEZ_A       161 PTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTS 240 Synechococcus e...
WP_011056280 161 PEPVSAPRHLEPLTEIEQATAGTLGAICLPTAKDLGFHWSGDLILAPGEAAAQAQLETFIDQHIQDYGEQRNYPAQPGTS 240 Thermosynechoco...
WP_011243704 162 PTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEAGTS 241 Synechococcus e...
WP_011320971 163 AKPVETLHNVEGLTEAEQELAQKAGVKALPTAKDLGFFWDADLIIAPGEAAAQAKLAEFTAKAITEYQEQRNFPGVNGTS 242 Anabaena variab...

1TEZ_A       241 GLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALF 320 Synechococcus e...
WP_011056280 241 LLSPALKFGVIGIRRVWTATQAAMAAARSEEAQRSIRTWQQELAWREFYQHALYWFPHLAERPHREGFATFPWLNNEAHF 320 Thermosynechoco...
WP_011243704 242 GLSPALKFGAIGIRQAWRAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALF 321 Synechococcus e...
WP_011320971 243 QLSAALKFGVIGIRTVWQTTLEALENSRSEETTTSIRTWQQELAWREFYQHAMYNFPELADGAYRATFKNFPWETNEEHF 322 Anabaena variab...

1TEZ_A       321 TAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPK 400 Synechococcus e...
WP_011056280 321 AAWCEGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTKDLIINPQWGERYFMQKLIDGDLAANNGGWQWSASSGMDPK 400 Thermosynechoco...
WP_011243704 322 TAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPK 401 Synechococcus e...
WP_011320971 323 QAWCEGKTGYPIVDAAMRQMNESGWMHNRCRMIVASFLTKDLLINPQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPK 402 Anabaena variab...

1TEZ_A       401 PLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIERR--GYPAPIVNHNLRQKQFKALYNQL 470 Synechococcus elongatus...
WP_011056280 401 PLRIFNPASQAQKFDPEAEYIRRWLPEVRSLDTIDLVTGNISPLERHrcGYPLPIVDHRQQQQRFKQLYQEH 472 Thermosynechococcus elo...
WP_011243704 402 PLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIGRR--GYPAPIVNHNLRQKQFKALYNQL 471 Synechococcus elongatus
WP_011320971 403 PLRIFNPASQSQKFDPDAEYIRQWVPELRSMDTEYLVTGKITPLERHavGYVKPIVDHQKQQQLFKQRYQQQ 474 Anabaena variabilis
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