Conserved Protein Domain Family
DapC

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TIGR03537: DapC 
succinyldiaminopimelate transaminase
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Statistics
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PSSM-Id: 274636
Aligned: 4 rows
Threshold Bit Score: 603.355
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_012674402  29 KIYDFGTGDPKEPTPDFIRKALIDAVPEVSQYPSVLGRKDLREAISKWFEKRFNVKLNPDTQIIPSAGSKEAIFHFPLVF 108 Sulfurihydrogen...
WP_027389610  29 TLYDFGTGDPTIPTSDFIIQALRDAIPSVSQYPTVAGESTMRTACAGYLQRRFQVSCNPATEILPSAGSKESVFHFPLAF 108 Chrysiogenes ar...
WP_011563073  58 RLFDFGAGDPREPTDPRIRRALLEAVPEVSQYPSASGTRALREAFCGWMERRHGVELDPDAEVLPASGSKEAIFHAHLPF 137 Rubrobacter xyl...
WP_011422878  34 RLFDFGLGDPKEPTPPFLREALRAAVPEVSQYPSAFGTAALRRAAAGYLHRRFGVTVDPEAQVLACAGAKEAIFHLPLAF 113 Anaeromyxobacte...
WP_012674402 109 IDPEEDKKRVIFGTPAYPVYERGTLYAGGIPTAVKLKKEDGFLLRLDKVEKSILEETKIVWINYPHNPTGATAPASYFKE 188 Sulfurihydrogen...
WP_027389610 109 LDPHTPRKYVIYPTPGYAVYERGTLFAEGECYPVILRPENNFLLDLDAIPSDILRQTAIVWINYPHNPTGAIATAAYYQR 188 Chrysiogenes ar...
WP_011563073 138 LHHTHERRGVAYGTPGYPVYERGALFAGGEALPVRLVREDGFLLPLEAVDP---QRTRILWLNYPHNPTGARAPRSYLEE 214 Rubrobacter xyl...
WP_011422878 114 AG-DPRRRKVVMPDPGYPTYEVGARFAGLEPVKVPLTARRRFLLEPEDVGEAVLRETLVYWISYPHNPTGAEAPRDYLRR 192 Anaeromyxobacte...
WP_012674402 189 TIDMCREYGIILCSDECYTELYFEE--KPHSALEFGIDNVVVFHSLSKRSGMTGYRSGFVAGDEKIISFYRKERANFGVA 266 Sulfurihydrogen...
WP_027389610 189 VAELAREYGFIVCSDECYCDIYDHDdaAPLSMLQFGRENILAFYSLSKRSGMTGYRSGFMAGDSTLVATYKKIRTSMGVA 268 Chrysiogenes ar...
WP_011563073 215 AAAFCREHDILLFSDECYNEIYSGD--PPPSVLEVSRERTLAFCSLSKRSGMTGYRSAMMAGDAELISALGKLRPSVGVA 292 Rubrobacter xyl...
WP_011422878 193 VGAAALEHGFIVASDECYADIYFGE--PPASMLEVQLENVLAVHSCSKRSGMTGYRSGFLAGDPDLVRGLRALRSHPGVS 270 Anaeromyxobacte...
WP_012674402 267 SPDFIQQAAKAAWEDENHVLERNKIFKQKRDLFIEFLNKVGLEYLYPKATFYIWIKAPSWIDAKDYVKALLENGIVVSIG 346 Sulfurihydrogen...
WP_027389610 269 SPTFIQAAATAAWSDDAHVAWRRGIFGERKQLFLDFFARHGLECHSGPATFFLWVKAPAGYDGQSYATHLLRHGIVVSPG 348 Chrysiogenes ar...
WP_011563073 293 SPSFVQAAAAAAWSDDEHVEERRRTFARKRGLFVEFFRRAGLDFLPTDATFYLWVAVPGG-DDEAYALRLLEEGIVVAPG 371 Rubrobacter xyl...
WP_011422878 271 QPEFVAAAATAAWSDDAHAAERREIFRRKRDRFLRFFAEKGLVADASDATLYLWVRVPEGHTSSSYALRLLDAGIVVAPG 350 Anaeromyxobacte...
WP_012674402 347 ENFCSSlevseescESQYFRVALVPTLEECKEALTLWERV 386 Sulfurihydrogenibium azorense
WP_027389610 349 SFFGDG--------SAEYIRIALVPDKEKCQQAIALWEKL 380 Chrysiogenes arsenatis
WP_011563073 372 RSFGPG--------GEGYVRVALVPSLEECEEAVRRWEAL 403 Rubrobacter xylanophilus
WP_011422878 351 IAFGAG---------EGYVRVALVPTLEECEEAIRAWARI 381 Anaeromyxobacter dehalogenans
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