Conserved Protein Domain Family
FimV_core

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TIGR03505: FimV_core 
FimV N-terminal domain
This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.
Statistics
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PSSM-Id: 274615
Aligned: 19 rows
Threshold Bit Score: 107.806
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011001922  220 DSLYDVASNaVQGQdGVSLDQMLLALYRNNPKAFIGGNINRLRTGSVLTVPSAAEAQKVSSREARREVVAQTSGF 294  Ralstonia solanace...
WP_021784486  160 DTLWQIAAR-NTQGg--SIQQTMIAIQALNPDAFIGNNINQLKVGQVLRLPDQQQIQSIAQGEANREVAEQYAAW 231  Pseudomonas putida...
WP_011588745  199 DTMWQIALN-NRPSnSVSVQQMLVAIQQINPDAFINNNVNLVREGVVLRIPSEQEVRTISTRSAIAEVADQNRQW 272  Alcanivorax borkum...
WP_011468560  207 QTLWEIAAQ-VRPDsSVSVQQTMLAIQRLNPDAFINNNINLLKRGQILRVPDASQIKEFTRQEAVRSVAQQNAAW 280  Saccharophagus deg...
WP_011396309  192 DTLWEIALK-TRPDsSVSPQQMMLAIQDLNPDAFFDSNINKLKSGQVLRIPDIEQIQQRSNRDAVRQVSLQNREF 265  Hahella chejuensis
WP_011072967   62 DTFWSIAQK-VRPDaSVSVYQVMAAVFDANPHAFNSDSYNSLERGMILLIPSKEVMLSIPNSVAIARAERSDKQV 135  Shewanella oneidensis
WP_011234269   62 DTLWDIARR-YKPHsSVTQYQTMVAIVQANDDAFVDGNMNRMLNGFYLRIPSLQEIKMVNPEAARRQVVVDSQLK 135  Idiomarina loihiensis
WP_013753055   54 DTLWRIASE-ARQNtSHSIYQVMLATYELNPDAFERDNINLMRDGAILRLPASGYVSRVNEAQAIAKVRYDNQLL 127  Glaciecola sp. 4H-...
WP_011044553   55 DTLWNIATR-VRPDnRLSVYQVMQALYQENPQAFVDSNINYLVEGQYLKIPSFNNMMAINTNSAKKKSESDSKAW 128  Colwellia psychrer...
WP_011262252   83 ETLWSIASR-VNPSnTTSVQQTLLAIYRLNPQAFENNNIHGLEPNSRLRLPTLEQVRRENTDDAKQLLLAHNKKL 156  Aliivibrio fischeri
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