Conserved Protein Domain Family
cas_csx13_C

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TIGR03486: cas_csx13_C 
CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype, C-terminal region
Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the C-terminal region or downstream gene; the N-terminal region is modeled by TIGR03485. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.
Statistics
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PSSM-Id: 132525
View PSSM: TIGR03486
Aligned: 4 rows
Threshold Bit Score: 200.868
Threshold Setting Gi: 119455653
Created: 9-Oct-2014
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EAW36790              1 MTDNLSEHLPWWSNFFIYFKEKDQFKELRY-------------------HRDKLNTMIENSH--------WDLPTQKLFI 53  Lyngbya ...
jgi:Ava_3491        345 IANNLAMGRSWWANWISFIKNKKSFKQFTD-------------------EYKGINKMIQDSE--------WDIEAQKLFI 397 Anabaena...
chgcsh:AE010300_704 372 IAENLVQGKRWYYQFAKPLSWYIDTLERKRksspgsshekiwfesirrfERAELIKFMENNEi-------WNSEEEQWFV 444 Leptospi...
WP_020479129        361 ITENLAASRPWYADFATATTAEGRFIHDYR-------------------DRDNLGALLWHERkgliamhpYLGEAEQWLV 421 Myxococc...
EAW36790             54 QAFHEALRRIYGQVAAKAKk---qEDNWIQFDREYQQIYSSLTRITDFESFQSFICQFWARASrpghLIPTLQEHWDKFL 130 Lyngbya ...
jgi:Ava_3491        398 QACHEALRKIYAKIYSRTK-----EGEYAQIERENTRILSQLKRCTNTDNFRKFIAEFWGRAG----QIAILEEHWMELL 468 Anabaena...
chgcsh:AE010300_704 445 KSFHETLSRLYAKEASHLNrrggsRTLGDRWKHMNEKIYRDLAQAKTSPQIRTVISDLWAKSG----RPPSLQEHTGALW 520 Leptospi...
WP_020479129        422 QSVHLALRSRFKSIYADTKes-apATRSNRLKGERERLRLSFAGAKTPEQVRAALADLWSRAG----TNRELQEHWRDIL 496 Myxococc...
EAW36790            131 FQDEDF-NWEQARNLALLALASYK 153 Lyngbya sp. PCC 8106
jgi:Ava_3491        469 PLTTGIgNWKVARDLTFIAMASYP 492 Anabaena variabilis ATCC 29413
chgcsh:AE010300_704 521 KFISKD--SEYARDLSLVALASYQ 542 Leptospira interrogans serovar Lai str. 56601
WP_020479129        497 QLLGPE-RWRAARDLALVALASYQ 519 Myxococcus xanthus
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