Conserved Protein Domain Family
incFII_RepA
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TIGR03474: incFII_RepA 
incFII family plasmid replication initiator RepA
Members of this protein are the plasmid replication initiator RepA of incFII (plasmid incompatibility group F-II) plasmids. R1 and R100 are plasmids in this group. Immediately upstream of repA is found tap, a leader peptide of about 24 amino acids, often not assigned as a gene in annotated plasmid sequences. Note that other, non-homologous plasmid replication proteins share the gene symbol (repA) and similar names (plasmid replication protein RepA).
Links
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Statistics
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PSSM-Id: 132514
Aligned: 3 rows
Threshold Bit Score: -1
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
P03066     9 YRQVKNPNPVFTPREGAGTLKFCEKLMEKAVGFTSRFDFAIHVAHARSRGLRRRMPPVLRRRAIDALLQGLCFHYDPLAN 88  Escherichia coli
CAA08925  11 YRQVKNPNPVFTPREGKKTLPFCRKLMAKAEGFTSRFDFSIHVAFLRSLGKRHRMPPLLRRRAIDALLQAMCFHYDPLAN 90  Klebsiella pneumoniae
AAC62601  16 YRQVKNPNPEFTPREGKKTLPFCRKLMAKAEGFTSRFDFSMHVAFARSLSLRHRMPPLLRRRAIDALLQGMCFHYDPLAN 95  Yersinia pestis
CAA08925  11 YRQVKNPNPVFTPREGKKTLPFCRKLMAKAEGFTSRFDFSIHVAFLRSLGKRHRMPPLLRRRAIDALLQAMCFHYDPLAN 90  Klebsiella pneumoniae
AAC62601  16 YRQVKNPNPEFTPREGKKTLPFCRKLMAKAEGFTSRFDFSMHVAFARSLSLRHRMPPLLRRRAIDALLQGMCFHYDPLAN 95  Yersinia pestis

P03066    89 RVQCSITTLAIECGLATESAAGKLSITRATRALTFLSELGLITYQTEYDPLIGCYIPTDITFTSALFAALDVSEEAVAAA 168 Escherichia coli
CAA08925  91 RVQRSITNMAIECRLATESKSGNLSITRATRALKFLAELGLITYQTEYDPQIGCNIPTDITFTPALFSALDVSEVAVVAA 170 Klebsiella pneumoniae
AAC62601  96 RIQRSITNLAIECGLATESKSGNLSITRATRALRFLSELGLITYQTEYDPQIGCNIPTDITFTPALFSALDVSDVAVAAA 175 Yersinia pestis
CAA08925  91 RVQRSITNMAIECRLATESKSGNLSITRATRALKFLAELGLITYQTEYDPQIGCNIPTDITFTPALFSALDVSEVAVVAA 170 Klebsiella pneumoniae
AAC62601  96 RIQRSITNLAIECGLATESKSGNLSITRATRALRFLSELGLITYQTEYDPQIGCNIPTDITFTPALFSALDVSDVAVAAA 175 Yersinia pestis

P03066   169 RRSRVVWENKQRKKQGLDTLGMDELIAKAWRFVRERFRSYQTELKSRGIKRARARRDADRERQDIVTLVKRQLTREIAEG 248 Escherichia coli
CAA08925 171 RRSRVEWENKQRKKQKLKPLEMDELIAKAWRFVRERFRSYQSERKSHGRKRATARRDASRQRKDIETRVRQQLTREYATG 250 Klebsiella pneumoniae
AAC62601 176 RRSRVEWENQQREKQRLPRLEMDELIAKAWRFVRERFRSYQTERKAHGLKRARARRDVDRTRRDIEAIVNRQLTREIAEG 255 Yersinia pestis
CAA08925 171 RRSRVEWENKQRKKQKLKPLEMDELIAKAWRFVRERFRSYQSERKSHGRKRATARRDASRQRKDIETRVRQQLTREYATG 250 Klebsiella pneumoniae
AAC62601 176 RRSRVEWENQQREKQRLPRLEMDELIAKAWRFVRERFRSYQTERKAHGLKRARARRDVDRTRRDIEAIVNRQLTREIAEG 255 Yersinia pestis

P03066   249 RFTANREAVKREVERRVKERMILSRNRNYSRLATA 283 Escherichia coli
CAA08925 251 RFRGDHEALKREVERRVQERMLLSRGNNYTRLATV 285 Klebsiella pneumoniae
AAC62601 256 RFVGNLDAVRREKARRVKERMLMSRNNNYTRLATG 290 Yersinia pestis
CAA08925 251 RFRGDHEALKREVERRVQERMLLSRGNNYTRLATV 285 Klebsiella pneumoniae
AAC62601 256 RFVGNLDAVRREKARRVKERMLMSRNNNYTRLATG 290 Yersinia pestis
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