Conserved Protein Domain Family
shape_MreD

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TIGR03426: shape_MreD 
rod shape-determining protein MreD
Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
Statistics
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PSSM-Id: 274574
Aligned: 70 rows
Threshold Bit Score: 41.0521
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011243526  22 SPWLATGLSALGLTLLMLFRLPGLELAGv-APHWVLLWLITWAPGHAVWQGIIAGITLGFLLDALSTPY---PTHALGLA 97  Synechococcus e...
WP_011713078   8 LAPWLPLLSLMLAVAVQEVALPYQAWSVf-RPDLLLVALFYWRLYRPDRCGPGSAFGAGVAVDLLSGGPm--GINALSKI 84  Magnetococcus m...
WP_010986859   4 NRMLLSTALVVVALVIQVSVLARLHLPGa-VPDLVLLTVLGLAMVYGHVGGALIGFGAGLLADLVPPADhaaGRYALVLC 82  Streptomyces av...
WP_002668698   3 kvILWTSLSVFFITLLQTAIFSHISFFTv-LPDLVLLTVIYIAISNGSLTGLICGFIAGLLADFLSAAPi--GLHSFIFT 79  Treponema denti...
WP_005792054   8 RIGWFVGLILLQVLILNNVHIAGVa-----TPFLYVYFILKFNSGTSRNELMVWGFCMGLAIDIFSNTP---GMNAAATV 79  Bacteroides
WP_014226417   3 knLFKISLSFIFFVALQVLVLNHIHLFHlvTPFLYLYIILKIPLDLTRVQIIWIAFLTGLTIDIFSNTL---GMHAAACT 79  Tannerella fors...
WP_013064509   6 INRLVMFVALFVA---QVLILNHVHLLGvgTPLLYVYFAITFRRNFPKWLVLVSCFLLGLLIDVFSNTP---GLAASTMT 79  Prevotella rumi...
WP_014710455   8 TLGWFVVLVLAQVFVLNYIHLFGFa-----TPLPYIYFIFLFRRNYPQWAIILWGFLMGLVIDTFSNTP---GVSSASLT 79  Prevotella inte...
WP_008762749   8 RIGWFIGLVLLQVLILNNVHIAGYa-----TPFLYIYFILKFASGTSRNELMLWAFFFGLTIDIFADTP---GMNAAATV 79  Bacteroides
WP_011564506   4 TSVLRASLVVALGALLEAVLSPYLTLGPv-SPKFTLLAIVYAVYPLGDLQAVLLGFFGGVLYDALGGGIf--GVGAMGGL 80  Rubrobacter xyl...
WP_011243526  98 IAGWILtAGYRRRWFSLEPIALISLCFGLAILLEATTALQFlihfrdgnnwapeagntaqriiadlnrpllpdQAAGInp 177 Synechococcus e...
WP_011713078  85 LITLLI-RRFGPRLRATDAIFLVPILALLSLLDQMIQLGLA--------------------------------TLVQ--- 128 Magnetococcus m...
WP_010986859  83 VIGYLAgLAKPENGRLKSASGPMAVVVAAAIGTTLLYAGVG--------------------------------ALVGD-- 128 Streptomyces av...
WP_002668698  80 LTGYLV-GKFYGIYNLNKVIFPCILGGLGFVFKVLLLFVLK--------------------------------ILFGQ-- 124 Treponema denti...
WP_005792054  80 LLAFLR-PLFLRLFTPRDTLDSIVPSLKSMGIASFLKYLVV--------------------------------SVFVH-- 124 Bacteroides
WP_014226417  80 LIGMVR-NPLLTALIDRDIHESATPSYTTLGVIPFMNYTLGm-------------------------------ALIHh-- 125 Tannerella fors...
WP_013064509  80 LVALAQ-TYLIELVAPRDSAEDLEASAKVLGLTKFVTLSALl-------------------------------TLLYc-- 125 Prevotella rumi...
WP_014710455  80 LIAAIQ-PYMLRPFISRDSAEDLKPGIATLGYGQYIWYSIIl-------------------------------TLIYc-- 125 Prevotella inte...
WP_008762749  80 LLAFLR-PSLLRLFTPRDNLDSIIPSFKSMGITPFLKYTTAsvfv-------------------------hslALLSi-- 131 Bacteroides
WP_011564506  81 IAALLAaRAGAVRRKGMEGLLMAQVAALSVAAYDIINLAGR--------------------------------GLAGl-- 126 Rubrobacter xyl...
WP_011243526 178 rfvaqpLYFLRGIvwdfahigLA--SAVITSL-CLPLVFIP 215 Synechococcus elongatus
WP_011713078 129 ---------GWGVrwp---llLG--RVVSTALvAPLVVGAL 155 Magnetococcus marinus
WP_010986859 129 ------TAARHVGlvs---llVT--AAVYDLLlAPFVVpgi 158 Streptomyces avermitilis
WP_002668698 125 ------NIHTYNIfsi---nfAI--EAAVNIFlLPLYFYFL 154 Treponema denticola
WP_005792054 125 ------HFMLLTLeff--sftSI--PLLLLRVvSSTILTIT 155 Bacteroides
WP_014226417 126 -----lTLFLIESisl---fdPL---FLLLRIfSSVVLTTL 155 Tannerella forsythia
WP_013064509 126 -----lVFFALEAfnf---fdVL---LWLARSvISFVLTMV 155 Prevotella ruminicola
WP_014710455 126 -----tVFFTLEMfsf---fnIL---VWLQCVgGSALLSLF 155 Prevotella intermedia
WP_008762749 132 ------EFFSFTSi-----------wLLLLRViSCTLLTLT 155 Bacteroides
WP_011564506 127 ------YAPPLGGylf---agVLpdALLNGALaYAFAAWMA 158 Rubrobacter xylanophilus
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