4B62


Conserved Protein Domain Family
type_VI_ompA
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TIGR03350: type_VI_ompA 
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type VI secretion system peptidoglycan-associated domain
The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Links
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Statistics
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PSSM-Id: 274533
Aligned: 16 rows
Threshold Bit Score: 143.211
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
4B62_A        15 RLARFLADDIKAQRVAVEDAVD-RSVVTIRGDELFASASASVRDEFQPLLLRIADALRKVKGQVLVTGHSDNR-PIATLR 92  Pseudomonas aer...
WP_011217430 294 KIQQLLQSEVERGLLEFEEHAD-RIRIVLNSNDLFASGSNEVKASIAPILSKIAHTLESTNGRIMIVGHTDDK-PIFTSK 371 Photobacterium ...
WP_011468005 319 ELRALLTPEIDRGILSVQDYPT-HTSIVLHNQELFTSGNINITPSFEPILDKIAKALEAIPGRIIVSGHTDNE-SIRTPR 396 Saccharophagus ...
WP_013060341  48 RLSILLKDEIAKQLVSVDETSN-NSKVIFKGDSMFMVGSDNVRPEMIDVIKRVAQEVHRVKGAILIVGHTDSM-PINKPG 125 Yersinia pestis
WP_011081396 291 QIQRSLATEIEMVLLKVDALPD-RVRITFQSNDLFESGSAELVAHIFPVVSKVARALEATNGKILVVGHTDNN-PIFTSK 368 Vibrio vulnificus
WP_011354598 296 HLKQLLKDEIAAGTVSVDEDAR-HSAVTFRGDAMFKPGGASVQASMNPLILKIAGEVAKVPGKVTIIGYTDNV-PIRSRH 373 Burkholderia lata
WP_009894733 295 RLSILLKNEIARGLLTVDEDDA-RSVVVFRGDSMFRSGESRVLPEIEPVLDKVAREVARVGGRVTVTGHSDNQ-PIRRAD 372 Burkholderia th...
WP_028170701 368 RIRNALAKENTACAMTADQTPS-FIVIRVCDLALFASGQATILDGFKPIALRVAATLDKEPGRIRVVGHTDSS-PIRTVR 445 Bradyrhizobium ...
WP_010910863 352 RIRAALAQQIAAGGLGVGTKGD-FIVVEISNQLLFASGQAELKAQFQPIAADIAKALDAEAGPIKIVGHTDNVkPKKSSA 430 Mesorhizobium loti
WP_011408948 296 aLAPLLAAEQRAGLLTVHTDGDgRSTVRLASASMFPSGSAELDADQTYLLERVAAALEQVPGRVVVVGHTDDQ-PVRSLR 374 Xanthomonas oryzae

4B62_A        93 YPSNWKLSQARAQEVADLLGATTGDAGRFTAEGRSDTEPVA-TNASAEGRARNRRVEITV 151 Pseudomonas aeruginosa PAO1
WP_011217430 372 YPSNWHLSLARATAVANVLAMGTELRGRLWPEGQGDANPRN-PNTSKANRASNRRVEIDL 430 Photobacterium profundum
WP_011468005 397 YPSNWHLSLARASEVVKYLAASADLKSRLLPEGRGANEPIM-SNDTAAGRAHNRRVVIDV 455 Saccharophagus degradans
WP_013060341 126 FPNNQVLSEKRAANVARYMEQAGIPTDKIRFEGKGETQPVS-SNDDATGRSQNRRVEIFV 184 Yersinia pestis
WP_011081396 369 FPSNWHLSLARATALTDRLASAGKLSGRVIPEGMGDARPLV-SNETAEGRSINRRVEIDL 427 Vibrio vulnificus
WP_011354598 374 FASNQVLSEERAIQVMQMLQAAGVPASRLEAVGKGDTDPVG-DNRTAQGRAQNRRVEIDV 432 Burkholderia lata
WP_009894733 373 IPNNLVLSEKRAAYVAQILVQRGTPADHIRSEGRGDAQPVA-ENTTPAGRSRNRRVEIAV 431 Burkholderia thailandensis
WP_028170701 446 FPTNFELSVERAKAVAAALKPGLTDGSRVDVEGKGADAPIA-SNTTPEGRAKNRRVEIFI 504 Bradyrhizobium japonicum
WP_010910863 431 FKSNFDLSVARAKAVQAMIARQLKDPSRLSVDGKGEDEPIA-DNATADGRAKNRRVDVMI 489 Mesorhizobium loti
WP_011408948 375 FKDNFALSARRAESVGAVLAAGLRDRRRVQTSGAGDSQPIAlPPQLPGNRARNRRVEILL 434 Xanthomonas oryzae
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