Conserved Protein Domain Family
OMP85_target

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TIGR03304: OMP85_target 
outer membrane insertion C-terminal signal
This hidden Markov model detects a 10-residue targeting sequence common to beta-barrel outer membrane proteins (OMP) that rely on Omp85-like proteins for insertion into the outer membrane. Hits should be trusted if they include the last amino acid of a protein sequence that occurs in Gram-negative bacteria. It has been noted that Omp85 target sequences differ somewhat by species, while this model works generally for most Proteobacteria.
Statistics
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PSSM-Id: 274515
Aligned: 146 rows
Threshold Bit Score: 1e+06
Created: 8-Oct-2014
Updated: 11-Oct-2014
Structure
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Aligned Rows:
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Sequence Alignment
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