Conserved Protein Domain Family
methan_mark_16

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TIGR03287: methan_mark_16 
putative methanogenesis marker 16 metalloprotein
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members. [Energy metabolism, Methanogenesis]
Statistics
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PSSM-Id: 274501
Aligned: 6 rows
Threshold Bit Score: 603.682
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011032089  28 VFTAEEISSRIRAGEEIGLEDVDVVTTATRGIMSGTYAVFSFKVSEPDSFIKASEVFLNGVPAVVGPCPNERLGVLDIIV 107 Methanosarcina ...
WP_010877291  40 VFTADEIKDMVRDGDVPSADEVDVVTTATCGVMSGTAAVMHLRVSEPGSFRKAASVELNGIPAYPGPCPNENLGSVDLFI 119 Methanothermoba...
WP_011449918  18 ILTASELKKRITQGD--TVSDVDVVTCGTCGVMSGTYAVLSVPVAPPGTFSRADTISLNGVPAIPGPCPNERLGLVDLMV 95  Methanospirillu...
WP_011406837  15 VLTAEELKTKLRNNEEVTVDDVDVVTCGTSGIMSGTAALFHMPVSEPGKFNKAKEVYINGIPAYPGPCPNELLGSVDVML 94  Methanosphaera ...
WP_011018728   4 VVRIDEFWD-MTEGER---RSVDAVTCATVGLMSGVYGILSFHVAEPGEVRRFEEVYLEGIRLPVGPCPNERLGLVECVV 79  Methanopyrus ka...
WP_010871205   7 VITIDELKKYIRNNEEDKIEEVDVVTSATCGIMSGTAGIFHIPFNE--VFKRAEEIYLNDIKGVVGICPNEFLGKVDAIF 84  Methanocaldococ...
WP_011032089 108 LGTAHSvsDPRYGGGHLFRDMVEGKIIRVDVTTNEGKCFSVETCLSEIPFARLYATRHAFKNYRAFVNPGKDPIDTIFHA 187 Methanosarcina ...
WP_010877291 120 YGTGHSreDPDYGGGFLFRDLLLGSEVEVRVTSVEGRVVESTVTMDDIETARIVGTRMAFRNYTALVNPGETPVKSIFNA 199 Methanothermoba...
WP_011449918  96 FGTAHA--DDRYGGGHLFHDLIAGEEIHIAVTS-AGKDYEAYVTLSDLPFARLFTTRSAFKNYSAIINQSSGPVKTIFSA 172 Methanospirillu...
WP_011406837  95 YGTNHSetIDNYGGGFLLKDLIMGKSVEVKVIDIEDNEFTKTITLDEIGTARLFGTRMAFKNYNSFTNPDSHAQKSIFNA 174 Methanosphaera ...
WP_011018728  80 PATAHG--D--VSGAYLLRTVAEGNEFDVIAVADDGREYEATIGPEELERAMIASTRACFRNYSAIFNDGERPASTIFAP 155 Methanopyrus ka...
WP_010871205  85 YGEV----------GFLFKDLVKGKVVEAKAIS-EGKIYKNEITIDDLPTAKMIGTRMAFKNYTAITNLSDEEVNTIFHR 153 Methanocaldococ...
WP_011032089 188 LPFEGEFREMTFCGCGELNPIENVP-GLETIGIGTRVLINGAEGFVTGQGTRSVPDNPNLTGFADLHDMVPEYMGGFVTS 266 Methanosarcina ...
WP_010877291 200 FEMPENCGGLSFSGCGDINPLENDP-SMETVHQGTGVLLNGARAIVLGEGTRSSPIKPNLMLSGDLHDMKPRYIGGFRTA 278 Methanothermoba...
WP_011449918 173 LPLQGTSTQATVSGCGEINPVENDP-TLRFLSAGSPVILNGAGGRVIGTGTRSSPYRPNLSVHADLKEMDAHFCGGFRTA 251 Methanospirillu...
WP_011406837 175 SPMEGPFNSYSFSGCGDVNPLANDP-NQDVIKPGLKVLLNGAEGIIIDNGTRSSSDKPNLLLTANIKDMDPHYVGGYKTG 253 Methanosphaera ...
WP_011018728 156 RPLEP--GEASFSGCGGYNPLEHDP-KLRLHRPGRRVLFCGAPGVITGKGTRSTRERPNLTLHANLTECDPTFMGEYRTS 232 Methanopyrus ka...
WP_010871205 154 LPLKK--GEASFSGCGMLNPLENMViKDEKDVVGKKALLNGAEAIILGFGTRASIEKPNLMMSADMKDMDAYYLGGFVTS 231 Methanocaldococ...
WP_011032089 267 GGPEIINTWAVPIPVLSRSMLENILKLDSQIPLKLVDLAGRI-PLCDITYGDVWDNaDLRVKYDPGKCINCKVCPVAEAC 345 Methanosarcina ...
WP_010877291 279 AGPEIFNTVAVPVPVTSERVLENLMVLNSDIKLPVADVRDRSrVITEITYEDVWSG-DVRPVHHPERCTDCAVCLAARRC 357 Methanothermoba...
WP_011449918 252 AGPECITSIGTAIPVVDTDVLSSLSVLDCDIAMPVVDISDRQ-PVGTASYEQVWTGtATRVLYHPERCLHCSPCDARTAC 330 Methanospirillu...
WP_011406837 254 MGPEVFDSVAIPIPVLNEDILNNLKVLNKDIPLPVCDIHGRHlPIATIDYS-VWDNtDYRPTTNPENCFECIPCLPEIYC 332 Methanosphaera ...
WP_011018728 233 AGPENIAGVASVIAV-TEETLPFLERDHSDAVLPVVKLSDRT-PIAETTYADVWVQeTVR--WNPDRCENCDPCRLEEKC 308 Methanopyrus ka...
WP_010871205 232 NGIEIYNTIAVPIKV--DEHKEALKKLDKDITLPLVNIFGRE-IIDIGSYAEVWENvDLRPKIYQDKCKNCRECLVEKYC 308 Methanocaldococ...
WP_011032089 346 PMGAVskgenGAEHNPELCFNCGLCISRCRGEAFRANLGTVRCEAggclRDIKVTLRQSDRARAVKAAQELKEQLLTGRF 425 Methanosarcina ...
WP_010877291 358 PTHAI-----DNGLDLDRCFGCGVCAWSCPSGAYEMDTGTVRIGE----LAVPIICRQSDRLRARELSLELKKLIENGDF 428 Methanothermoba...
WP_011449918 331 PVDAIr---eDGTINQTQCFVCGTCVQICKGSVYEGNFGSITYEG----AGIPIVLRQSDRRRAEILCRRVRDMLVRGEF 403 Methanospirillu...
WP_011406837 333 PVNAFk---kDKTVDTDLCYGCGYCATVCPRGVPIINTGVVSFESgdklRKIPVTCRQSDKKRAIEIANDLKEAILDGSF 409 Methanosphaera ...
WP_011018728 309 PYP-------YGDLRTGDCFHCGYCHEFCP--AVEVDLGELEVEG----RKLPIVARESSAYLAKKLMERAIEAVEEGKI 375 Methanopyrus ka...
WP_010871205 309 PTFAIkr-enGKIKITEDCFGCGVC-NICPYGVFKTKLGSV--------CGIPITCRQSDRKRALKLAKELKKKIERGEF 378 Methanocaldococ...
WP_011032089 426 RL 427 Methanosarcina mazei
WP_010877291 429 LM 430 Methanothermobacter thermautotrophicus
WP_011449918 404 QI 405 Methanospirillum hungatei
WP_011406837 410 KL 411 Methanosphaera stadtmanae
WP_011018728 376 DI 377 Methanopyrus kandleri
WP_010871205 379 KI 380 Methanocaldococcus jannaschii
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