Conserved Protein Domain Family
methan_mark_13

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TIGR03282: methan_mark_13 
putative methanogenesis marker 13 metalloprotein
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others. [Energy metabolism, Methanogenesis]
Statistics
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PSSM-Id: 274499
Aligned: 6 rows
Threshold Bit Score: 564.387
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_010877132   2 HPRPSPIAASLYTLRDLDADVIILHGPHGCCFRTGRLLETDGVRVLTTAMSEQDFIFGASDKLTETLRKAYEMFSPKL-- 79  Methanothermoba...
WP_011407030   3 HPRPSPIAAALYTLRDLEVDVIIMHGPAGCCFRTGRLLEDEGIRVITTAMSENDFIFGAGEKLSKTIREVYETFKPEN-- 80  Methanosphaera ...
WP_011032467  10 HPRPSSIVAALYTLRDLNVDVAILHGPPGCSFKHARLLEEDGIHVVTTGLDENGFVFGGHDKLVQVINKSIELFNPKI-- 87  Methanosarcina ...
WP_011447709   5 QPRPSSIVAALYTARDLEVDVAVLHGPSGCSFKHARLLEEDGMRVLTTSLAENEFVFGGQGRLEDVILYAEEKFAPKR-- 82  Methanospirillu...
WP_010870941   4 HPRPSPIAAAMYQLRDLGVDAIILHGPSGCCFRTARLLELDGVRVFTSNIDENAIVFGASENLKKALDYAIEYLKKELkk 83  Methanocaldococ...
WP_011019753   5 HPRPGPIPAAMYTLRDLLADAVVLHGPKGCCFRTARLLEKDGVRVFVTGMEEDDFVFGALEKLVELLEYVEERLEPEL-- 82  Methanopyrus ka...
WP_010877132  80 ----VGVVGTCASMIIGEDLKEAVQRAGIPARVLAVESHGGFgeGDNTEGAIIVLEAAAEQGIIPEEEAERQIKMLKLAT 155 Methanothermoba...
WP_011407030  81 ----IGVVGTCASMIIGENMKKVVKEADVDSNIIVVETHGGFdsGDNTAGAILTLKAANKAELIDEDEVKRQTQMLQKAT 156 Methanosphaera ...
WP_011032467  88 ----LGVVGTCASMIIGEEMHEAVLEANPDIPVIEVEVHAGY--HNNTKGVIFALESALDAGIIDHKEFERQEYLLQKAT 161 Methanosarcina ...
WP_011447709  83 ----MAVMGTCVSMIIGEDLQAAIDNSGVSTETIAVDIHAGF--TENIDGVIATLKPAAEIGWISLDELVRQQELLKAAN 156 Methanospirillu...
WP_010870941  84 erpmIGIVGTCASMIIGEDLWEFVDDDR--AIIIPVEVHSGS--GDNTIGAIKAMESALKLGIIDEKEFERQKFLLKKAT 159 Methanocaldococ...
WP_011019753  83 ----IGVVGTCVSSIIGEDLEAAVEEADVDATVVTVEVHNGM--GPNTEGVIRTLERAAEAGVIPEGEVERQKRLMRAAA 156 Methanopyrus ka...
WP_010877132 156 EIEKTRGMAQGKYIRPSYGDDKDEVALRVLEAIMEGRRVAFVLNAKKETSYLFADTLtLPFGS----LNPDNPPIIIANL 231 Methanothermoba...
WP_011407030 157 QLEKTRGMAKGEYIQPNYGDNKVKVANMIIDALNVNKKVSIVLNAKKETSYLFADIMsVPWSK----YYPDNLPVFIANT 232 Methanosphaera ...
WP_011032467 162 EVEKKFGAASKEYLAPSRGDVKYKVAKRLVELLKEGKKGLVIMNAKKETGYMFADIT-LAVNEvaeaLGKKENLVNMANI 240 Methanosarcina ...
WP_011447709 157 QVERLRGAAVREYIEPSRGDLKHKVAERLVDIIQEGKKGVAIMNAKKETAYMFADGL-TALHE----LAPDAPIVYSVNL 231 Methanospirillu...
WP_010870941 160 EVEKKRGMAKKEYIKPTYDDDLNEAIKVLKDLKEKDGKIACVLNAKKETAYLFAHPL-IVLNK----YF---NCVNIANL 231 Methanocaldococ...
WP_011019753 157 ELERRRGMASREYLEPWSGHDPSEVARVLLS----SEDVLAILNAKKETAYLFADPV-LEVGK----RG----AWVLANL 223 Methanopyrus ka...
WP_010877132 232 DKGIGLPRIRRHAENILSEIERsgnRVEHITGGLDEYPITGARAAEILRNE--EIEFAVVSGVPHALPVEE-LGl--ESV 306 Methanothermoba...
WP_011407030 233 DENIGLPYIKHHATVVNSNVDK---KMDYITGGLDEYPVTGIKAQTILEDE--DCDVTIVLGVPHAVDITK-VPg--KTI 304 Methanosphaera ...
WP_011032467 241 DPELGLPRVRQHAEYIMRDFKAhgvEIHEIIGGMDEYPVAGEKVSELIKEKysDYDFAVITGVPHAVPMEN-IGh-mELI 318 Methanosarcina ...
WP_011447709 232 EM-RGLPKVRRDAERIIADLDAtglSYV-KQGALDEYGATGDMLGRWIQDE--NPDFAFITGVPHAIPREY-TDg-iECF 305 Methanospirillu...
WP_010870941 232 DINKGLPKIRRDAQNILRRFKA-----DYITGGLDEYPITGERAVEILKDL--DVDAIVVSGVPHALPIEEiDKd-iIKI 303 Methanocaldococ...
WP_011019753 224 SPESGLPKVRRDAEVIGSIFREegiEFE-VTGSLDEYAVTGELLAEKIEEF--DPDSVLITGIPHAVAPEE-LDvdaTFV 299 Methanopyrus ka...
WP_010877132 307 AVTDGPRLVEPLRGLGYTHVVAELDAHARTLGQRSIVESDFGDALRRNI 355 Methanothermobacter thermautotrophicus
WP_011407030 305 AVTDGPRLVKPLMDMGYDYVITELDAHSKTLGAKNIVESEFASTLRGLL 353 Methanosphaera stadtmanae
WP_011032467 319 SITNGPRQVLPLKEMGHEHVMVEIDLHPKTLGVSQIVESEFGATLREVA 367 Methanosarcina mazei
WP_011447709 306 SVTNGPRQVAPLKDLGHEHVVVEIDLHPRTLGVRSIVESEFGAVIRSFL 354 Methanospirillum hungatei
WP_010870941 304 GISDGPRTYHPIKEI-YDYAIVELDAHAKVLGKRDIVKSRFGEILDYAL 351 Methanocaldococcus jannaschii
WP_011019753 300 AVTDGLREASALRELGYDYVVVEEEAHARVLGRREIVPSDLGEAIRQLS 348 Methanopyrus kandleri
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